Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015405.1 Corchorus olitorius cultivar O-4 contig15438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71525
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:888 original size:333 final size:331
Alignment explanation
Indices: 4--1717 Score: 1469
Period size: 333 Copynumber: 5.2 Consensus size: 331
1 CAC
* * ** *
4 AATACTCA-GAAAAATCTTATAATTCAACGCCAAAAAATATTTTAGGGTTTTTCACGCTTCTAAT
1 AATACTCATAAAAAAT-ATATAATTCAACGCC-AAAAATATTGAAGGGCTTTTCACGCTTCTAAT
* * * * *
68 ATCGTTTCTCCATT-TTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGT
64 ATCCTTTTTCTATTATTTTTC-GAATTAATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGT
* * *
132 AAAAATAAATCCGTAAATCC-ATCGTGGCTGAGAGATTTGATTAGATGAATATAGATATTTCGAG
128 AAAAACAAATCCTTAAATCCAAT-GTGGCT--GAGATTTGATTAGATGAATATAGATATTTCAAG
* * * * * * ** * *
196 AAGCCTT-TCTGCCCAAAAT-ATTGCCAAACAGAGCTGCAAGGC-CCGAAACCAGCATTTTTAGC
190 GAGTCTTGGC-GCCAAAAATCA-TGCAAAACTGA-C--CGGGGCTCCGGAA-C-GCGTTTTTAGC
* * ** *
258 CAAAAACCGTGATGGTAACGTACACGATTTCGGCTAAAATTTTGCAAAAAAAAAAGACCTGAAAA
248 CAAAAACCATGATGGTTA-GTACACGATTTCGGCTAAAATTTTGC---AAAAATTGACC-CAAAA
* * *
323 -AAACTTTCCTTAATTTTTGGCAAA
308 GATA-TTTCCTCAATTTTTGGCTAA
* * * * * * * * * *
347 AATACTTATGAAATATATATAATTTAATGTCAAAAAGATTGGAGGAG-TTTTCACGCTTTTCATA
1 AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGG-GCTTTTCACGCTTCTAATA
* * *
411 TCATTTTT-TCA-TATTTTTCTAGATTAATGTCTAATTAAATCGAAACAAGATTCAGATGT-TCG
65 TCCTTTTTCT-ATTATTTTTCGA-ATTAATTTCTAATTAAATCGAAACAAGATTCAGAT-TCTCG
* * * * * *
473 TAAAAACAAATCATTAAATGCAATGTGTCTAAGATTTGATTAGTTGAATAT-GAATATCTCAAGG
127 TAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAG-ATATTTCAAGG
* * * * *
537 AGTC-TGGACGCAAAAAATCATGCAAAACTGACTCGGGGCTCTGGAACTCATTTTTAGGCAAAAA
191 AGTCTTGG-CGCCAAAAATCATGCAAAACTGAC-CGGGGCTCCGGAACGCGTTTTTAGCCAAAAA
* * * **
601 TCATGATGATTATTACACGATTTCAACTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTC
254 CCATGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTC
666 AATTTTTGGCTAA
319 AATTTTTGGCTAA
* * *
679 AATACTCATAAAAAATATATAATTCAATGCCAAAAATATTGAAGGGTTTTTTACGCTTCTAATAT
1 AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGCTTCTAATAT
* * * * *
744 CCTTTTTTTTTTACTTTTTCCGAATTAATTTGTAATTAAATCGAAA-AAGATTTATATTCTCGTA
66 CCTTTTTCTATTA-TTTTT-CGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTA
808 AAAACAAATCCTTAAATCCAATGTGGCTGAGACTTT-ATTAGATGAATATAGATATTTCAAGGAG
129 AAAACAAATCCTTAAATCCAATGTGGCTGAGA-TTTGATTAGATGAATATAGATATTTCAAGGAG
* ** **
872 TCTTGGCGCCAAAAATCATGCAAAACTGACCGTGG-TCCCGGAACGCGTTTTTAGAAAAAAAAAA
193 TCTTGGCGCCAAAAATCATGCAAAACTGACCGGGGCT-CCGGAACGCGTTTTTAGCCAAAAACCA
* * * * * * * *
936 AGACTGTGTTGGTACACGATTTTGGCTAATATTTTCCAAGAATTGACCCGAAATAT-TTTCCTCA
257 TGA-TG-GTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCA
* * *
1000 ATTTTTAGCCAC
320 ATTTTTGGCTAA
* * *
1012 AATACTCATAAAAAGTTTATAATTCAATGCCAAAAATATTGAAGGGCTTTTCACGCTTCTAATAT
1 AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGCTTCTAATAT
* * * * * * * * *
1077 CGTTTTCCCTAATT-TTTTTTGAACTAATTTCTAATTAAATTGAAACATGATTCAAATGCTTGT-
66 CCTTTT-TCT-ATTATTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTA
* * **
1140 ------AA-----AGA--CAA--TGGCTGGGATTTGGCTAGATGAATATAGATATTTCAAGGAGT
129 AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGT
* * * *
1190 CTCGGCACCAAAAATATCATGCAAAACTGAACC-GGGCCCCGGAATGCGTTTTTAGCCAAAAACC
194 CTTGGCGCC-AAAA-ATCATGCAAAACTG-ACCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACC
* * * *
1254 -TGATGATTATTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAATGATATTTCCTCAA
256 ATGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAA
* * *
1318 ATTTTAG-TCAC
321 TTTTTGGCT-AA
* * *
1329 AATACTCAT-AAAAATGTATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGATTTTAATAT
1 AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGCTTCTAATAT
* * * * **
1393 CGTTTTTCATATT-TTTTT-GAATTAATATCTAAATAAATCGAAACAAGATTCAGATGCAAGTAA
66 CCTTTTTC-TATTATTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTAA
* * * * *
1456 AAACAAATCCTTAAATGCAATGCGGCTAACATTTTATTAGATGAATATAGATATTTCAAGGAGTC
130 AAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTC
* ** *
1521 TCGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCGACGAAACGCGTTTTTATG-CAAAAACCAT
195 TTGGCGCCAAAAATCATGCAAAACTGA-CCGGGGCTCCGGAACGCGTTTTTA-GCCAAAAACCAT
* * * * *
1585 GATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAGA-TGACACAAAAAAATTTTTCCTAAA
258 GATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAA-ATTGAC-CCAAAAGATATTTCCTCAA
*
1649 TTTTTGGATAA
321 TTTTTGGCTAA
* * * * * * *
1660 AATACTCATTAAAGATATATAATTTAACGCCAAAAAGATTGGAGGACTTTTTACGCTT
1 AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGCTT
1718 TAAATCGAAA
Statistics
Matches: 1121, Mismatches: 190, Indels: 131
0.78 0.13 0.09
Matches are distributed among these distances:
314 35 0.03
315 9 0.01
316 100 0.09
317 70 0.06
318 6 0.01
319 40 0.04
320 3 0.00
321 4 0.00
326 4 0.00
327 1 0.00
328 19 0.02
329 29 0.03
330 84 0.07
331 31 0.03
332 171 0.15
333 207 0.18
334 72 0.06
335 4 0.00
336 23 0.02
337 23 0.02
338 5 0.00
339 7 0.01
340 46 0.04
341 4 0.00
342 97 0.09
343 21 0.02
344 6 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (331 bp):
AATACTCATAAAAAATATATAATTCAACGCCAAAAATATTGAAGGGCTTTTCACGCTTCTAATAT
CCTTTTTCTATTATTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATTCTCGTAAA
AACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCT
TGGCGCCAAAAATCATGCAAAACTGACCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCATGAT
GGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGATATTTCCTCAATTTTT
GGCTAA
Found at i:2822 original size:15 final size:16
Alignment explanation
Indices: 2804--2833 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2794 ATAAATAATA
2804 ATATTATAAT-TAAAT
1 ATATTATAATCTAAAT
2819 ATATTATAATCTAAA
1 ATATTATAATCTAAA
2834 AATAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAATCTAAAT
Found at i:3809 original size:18 final size:18
Alignment explanation
Indices: 3786--3820 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
3776 TATAGTATAT
3786 ATAGTAAGATAAGATAAG
1 ATAGTAAGATAAGATAAG
3804 ATAGTAAGATAAGATAA
1 ATAGTAAGATAAGATAA
3821 TATTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATAGTAAGATAAGATAAG
Found at i:3813 original size:13 final size:13
Alignment explanation
Indices: 3795--3819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3785 TATAGTAAGA
3795 TAAGATAAGATAG
1 TAAGATAAGATAG
3808 TAAGATAAGATA
1 TAAGATAAGATA
3820 ATATTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
TAAGATAAGATAG
Found at i:18013 original size:39 final size:39
Alignment explanation
Indices: 17959--18038 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
17949 AAAATGCTAA
17959 TAGTGGCCATGGAAAGAAGAAGTTATGCAGTATCATCCT
1 TAGTGGCCATGGAAAGAAGAAGTTATGCAGTATCATCCT
*
17998 TAGTGGCCATGGAAAGAAGAAGTTATGCAGTATTATCCT
1 TAGTGGCCATGGAAAGAAGAAGTTATGCAGTATCATCCT
18037 TA
1 TA
18039 AAAAACCTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.28
Consensus pattern (39 bp):
TAGTGGCCATGGAAAGAAGAAGTTATGCAGTATCATCCT
Found at i:18354 original size:15 final size:15
Alignment explanation
Indices: 18334--18364 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
18324 ACTACAAGCA
18334 AAATTCACCATTCAT
1 AAATTCACCATTCAT
18349 AAATTCACCATTCAT
1 AAATTCACCATTCAT
18364 A
1 A
18365 TGCCAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTCACCATTCAT
Found at i:23475 original size:16 final size:16
Alignment explanation
Indices: 23456--23489 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23446 CGTCGTTTAA
23456 CTTTGGATGTGTTTTT
1 CTTTGGATGTGTTTTT
23472 CTTTGGATGTGTTTTT
1 CTTTGGATGTGTTTTT
23488 CT
1 CT
23490 ATTCCAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.09, G:0.24, T:0.62
Consensus pattern (16 bp):
CTTTGGATGTGTTTTT
Found at i:25079 original size:213 final size:213
Alignment explanation
Indices: 24706--25347 Score: 1176
Period size: 213 Copynumber: 3.0 Consensus size: 213
24696 GACCATTCGC
*
24706 AGTCAGCTTGTCCCGTGAAGAAAGCATGTTAGTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
1 AGTCAGCTTGTCCCGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
*
24771 TATCAATGCCAAGACTTCTTTCAAGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
66 TATCAATGCCAAGACTTCTTTCAGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
24836 ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
131 ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
24901 AGACCGACGAACTCTAGT
196 AGACCGACGAACTCTAGT
24919 AGTCAGCTTGTCCCGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
1 AGTCAGCTTGTCCCGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
*
24984 TATCAATGCCAAGACTTCTTTCTGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
66 TATCAATGCCAAGACTTCTTTCAGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
* * *
25049 ATAGAGCTACCGGGGGAAGGCCTTATAACTGTATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
131 ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
* *
25114 AGACCGGCGAACTCTAGC
196 AGACCGACGAACTCTAGT
*
25132 AGTCAGCTTGTCCAGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
1 AGTCAGCTTGTCCCGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
* *
25197 CATCAATGCCAAGACTACTTTCAGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
66 TATCAATGCCAAGACTTCTTTCAGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
*
25262 ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTAATTGA
131 ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
25327 AGACCGACGAACTCTAGT
196 AGACCGACGAACTCTAGT
25345 AGT
1 AGT
25348 TTTAAGTTCT
Statistics
Matches: 411, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
213 411 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (213 bp):
AGTCAGCTTGTCCCGTGAAGAAAGCATGTTATTTGGTGCTGCTATCCGTTCTTTGCTCTTAAAAT
TATCAATGCCAAGACTTCTTTCAGGAGTAGACTGCAGTTGATCAGGCTGTTTGGAGGCACTAGGG
ATAGAGCTACCGGGGGAAGACCTCATAACTGCATCGGGTACTGCTTCACTTTCTTGCTTATTTGA
AGACCGACGAACTCTAGT
Found at i:36343 original size:22 final size:22
Alignment explanation
Indices: 36307--36372 Score: 105
Period size: 22 Copynumber: 3.0 Consensus size: 22
36297 TCAGCGGTTG
36307 ATTTCACGTAAGCGGAAGACTCA
1 ATTTCACG-AAGCGGAAGACTCA
* *
36330 ATTTCAAGAAGCGGCAGACTCA
1 ATTTCACGAAGCGGAAGACTCA
36352 ATTTCACGAAGCGGAAGACTC
1 ATTTCACGAAGCGGAAGACTC
36373 TGGTAAGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 32 0.82
23 7 0.18
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
ATTTCACGAAGCGGAAGACTCA
Found at i:38604 original size:17 final size:17
Alignment explanation
Indices: 38559--38614 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
38549 TCACCTCCAT
* **
38559 ATCACTAGTGATTTAAG
1 ATCACCAGTGATCAAAG
38576 ATCACCAGTGATGC-AAG
1 ATCACCAGTGAT-CAAAG
38593 ATCACC-GATGATCAAAG
1 ATCACCAG-TGATCAAAG
38610 ATCAC
1 ATCAC
38615 ATGGGTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 2 0.06
17 32 0.94
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (17 bp):
ATCACCAGTGATCAAAG
Found at i:38896 original size:26 final size:26
Alignment explanation
Indices: 38860--38912 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
38850 GGTATGTAAA
*
38860 TAATCCGTATTGATTCGGAAAATTAT
1 TAATCCGTATTAATTCGGAAAATTAT
38886 TAATCCGTATTAATTCGGAAAATTAT
1 TAATCCGTATTAATTCGGAAAATTAT
38912 T
1 T
38913 TTTGTACGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (26 bp):
TAATCCGTATTAATTCGGAAAATTAT
Found at i:54866 original size:106 final size:106
Alignment explanation
Indices: 54681--54895 Score: 430
Period size: 106 Copynumber: 2.0 Consensus size: 106
54671 AGGATACATA
54681 CATACGAGAGTGCATTTTCATTCACACAAGTACAACCATGCATGTATTTAGGACAATAAAGTATG
1 CATACGAGAGTGCATTTTCATTCACACAAGTACAACCATGCATGTATTTAGGACAATAAAGTATG
54746 TTAGGCAATGGCCATAATGTGCTTCAAACATCAGTTGGACT
66 TTAGGCAATGGCCATAATGTGCTTCAAACATCAGTTGGACT
54787 CATACGAGAGTGCATTTTCATTCACACAAGTACAACCATGCATGTATTTAGGACAATAAAGTATG
1 CATACGAGAGTGCATTTTCATTCACACAAGTACAACCATGCATGTATTTAGGACAATAAAGTATG
54852 TTAGGCAATGGCCATAATGTGCTTCAAACATCAGTTGGACT
66 TTAGGCAATGGCCATAATGTGCTTCAAACATCAGTTGGACT
54893 CAT
1 CAT
54896 TTGGACAGAT
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 109 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (106 bp):
CATACGAGAGTGCATTTTCATTCACACAAGTACAACCATGCATGTATTTAGGACAATAAAGTATG
TTAGGCAATGGCCATAATGTGCTTCAAACATCAGTTGGACT
Found at i:62742 original size:40 final size:40
Alignment explanation
Indices: 62697--62838 Score: 187
Period size: 40 Copynumber: 3.5 Consensus size: 40
62687 TAAATCTTTT
* *
62697 TTGGGAGCTTCACTTTCGAGAGTCGTCTTTGCGTTCTGTG
1 TTGGGAGCTTCACTTCCGAGAGTCGTCTCTGCGTTCTGTG
* * *
62737 TTGGGAGCTTTACTGCTGAGAGTCGTCTCTGCGTTCTGTG
1 TTGGGAGCTTCACTTCCGAGAGTCGTCTCTGCGTTCTGTG
* * *
62777 TGGGGAGCTTCACTACCGAGAGTCGTCTCTGCGTTGTGTG
1 TTGGGAGCTTCACTTCCGAGAGTCGTCTCTGCGTTCTGTG
*
62817 -TGGGTAGCTTCACTGCCGAGAG
1 TTGGG-AGCTTCACTTCCGAGAG
62839 CCGTTTAAGA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 3 0.03
40 86 0.97
ACGTcount: A:0.12, C:0.21, G:0.33, T:0.34
Consensus pattern (40 bp):
TTGGGAGCTTCACTTCCGAGAGTCGTCTCTGCGTTCTGTG
Found at i:64638 original size:20 final size:20
Alignment explanation
Indices: 64609--64883 Score: 133
Period size: 20 Copynumber: 13.8 Consensus size: 20
64599 GAATTAAGGC
*
64609 AAGTTCAATGTCAATTGGGA
1 AAGTTCAATGTGAATTGGGA
* * ** *
64629 AAGTTGAATGTGTATAAGGC
1 AAGTTCAATGTGAATTGGGA
* *
64649 AAGTTCAATGTCATTTGGGA
1 AAGTTCAATGTGAATTGGGA
* ** ** *
64669 AATTTGGATGTGAATAAGGC
1 AAGTTCAATGTGAATTGGGA
* *
64689 AAGTTCAATGTCATTTGGGA
1 AAGTTCAATGTGAATTGGGA
** * ** *
64709 AAGTTGGATTTGAATAAGGC
1 AAGTTCAATGTGAATTGGGA
*
64729 AAGTTCAATGTCAATTGGGA
1 AAGTTCAATGTGAATTGGGA
** ** *
64749 AAGTTGGATGTGAATCAAGGC
1 AAGTTCAATGTGAAT-TGGGA
*
64770 AAGTTCAATGTCAATTGGGA
1 AAGTTCAATGTGAATTGGGA
* ** ** *
64790 AATTTGGATGTGAATAAGGC
1 AAGTTCAATGTGAATTGGGA
64810 AAGTTCAATGTGAATTGGGA
1 AAGTTCAATGTGAATTGGGA
** ** *
64830 AAGTTGGATGT--ATCAAGGC
1 AAGTTCAATGTGAAT-TGGGA
64849 AAGTTCAATGTTG-ATTGGGA
1 AAGTTCAATG-TGAATTGGGA
*
64869 AAGTTAAATGTGAAT
1 AAGTTCAATGTGAAT
64884 GTGCTGCGTA
Statistics
Matches: 170, Mismatches: 80, Indels: 10
0.65 0.31 0.04
Matches are distributed among these distances:
18 2 0.01
19 12 0.07
20 140 0.82
21 16 0.09
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (20 bp):
AAGTTCAATGTGAATTGGGA
Found at i:64658 original size:40 final size:40
Alignment explanation
Indices: 64596--64883 Score: 427
Period size: 40 Copynumber: 7.2 Consensus size: 40
64586 TGAGGGCCAT
*
64596 TGTGAATTAAGGCAAGTTCAATGTCAATTGGGAAAGTTGAA
1 TGTGAA-TAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
* * *
64637 TGTGTATAAGGCAAGTTCAATGTCATTTGGGAAATTTGGA
1 TGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
*
64677 TGTGAATAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGA
1 TGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
*
64717 TTTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
1 TGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
*
64757 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAATTTGGA
1 TGTGAAT-AAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
*
64798 TGTGAATAAGGCAAGTTCAATGTGAATTGGGAAAGTTGGA
1 TGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
** **
64838 TGT--ATCAAGGCAAGTTCAATGTTGATTGGGAAAGTTAAA
1 TGTGAAT-AAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
64877 TGTGAAT
1 TGTGAAT
64884 GTGCTGCGTA
Statistics
Matches: 227, Mismatches: 16, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
38 2 0.01
39 32 0.14
40 147 0.65
41 46 0.20
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (40 bp):
TGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGA
Found at i:64807 original size:81 final size:81
Alignment explanation
Indices: 64596--64883 Score: 438
Period size: 81 Copynumber: 3.6 Consensus size: 81
64586 TGAGGGCCAT
* * *
64596 TGTGAATTAAGGCAAGTTCAATGTCAATTGGGAAAGTTGAATGTGTATAAGGCAAGTTCAATGTC
1 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGATGTGAATAAGGCAAGTTCAATGTC
* *
64661 ATTTGGGAAATTTGGA
66 AATTGGGAAAGTTGGA
* *
64677 TGTGAAT-AAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATTTGAATAAGGCAAGTTCAATGTC
1 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGATGTGAATAAGGCAAGTTCAATGTC
64741 AATTGGGAAAGTTGGA
66 AATTGGGAAAGTTGGA
* *
64757 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAATTTGGATGTGAATAAGGCAAGTTCAATGTG
1 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGATGTGAATAAGGCAAGTTCAATGTC
64822 AATTGGGAAAGTTGGA
66 AATTGGGAAAGTTGGA
** **
64838 TGT--ATCAAGGCAAGTTCAATGTTGATTGGGAAAGTTAAATGTGAAT
1 TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGATGTGAAT
64884 GTGCTGCGTA
Statistics
Matches: 191, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
79 38 0.20
80 74 0.39
81 79 0.41
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (81 bp):
TGTGAATCAAGGCAAGTTCAATGTCAATTGGGAAAGTTGGATGTGAATAAGGCAAGTTCAATGTC
AATTGGGAAAGTTGGA
Found at i:66669 original size:23 final size:23
Alignment explanation
Indices: 66643--66689 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
66633 GGTGCGGGAC
* *
66643 ATCTCCACTCCAATAAATTGCCA
1 ATCTCAACTACAATAAATTGCCA
*
66666 ATCTCAATTACAATAAATTGCCA
1 ATCTCAACTACAATAAATTGCCA
66689 A
1 A
66690 ATTGTTTGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.28, G:0.04, T:0.28
Consensus pattern (23 bp):
ATCTCAACTACAATAAATTGCCA
Found at i:67971 original size:29 final size:30
Alignment explanation
Indices: 67932--68009 Score: 81
Period size: 32 Copynumber: 2.6 Consensus size: 30
67922 CCTGATTTTA
*
67932 CAAA-TTCAGGGGGCAAAGTGG-CACAATTT
1 CAAAGTTCAGGGGGCAAACTGGCCA-AATTT
* *
67961 -AAAGTTCAGGGGACAATCTGGCCTAAATTT
1 CAAAGTTCAGGGGGCAAACTGGCC-AAATTT
67991 GCAAAGTTCAGGGGGCAAA
1 -CAAAGTTCAGGGGGCAAA
68010 AAGGCTATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 3 0.08
29 14 0.36
30 6 0.15
31 1 0.03
32 15 0.38
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.21
Consensus pattern (30 bp):
CAAAGTTCAGGGGGCAAACTGGCCAAATTT
Found at i:69757 original size:332 final size:334
Alignment explanation
Indices: 68173--71509 Score: 4689
Period size: 333 Copynumber: 10.0 Consensus size: 334
68163 ATAATGATAA
* * * * * * * * * *
68173 AAATTATTTCAGGAAAAATATGAAAAATGATATTAATAGTGTTAAAAGTTCTTCAATCTTCTTGA
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* ** * * *
68238 CGTTACATTGTATATATTTTAAGAGTATTCAATCCAAAAATTGTGGAAAAAATTATCGCAGTCAT
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
* * * *
68303 TTTTTTACAAAATTTTAG-CAAAATCGTGTAATAATCATCATGGTTTTTGGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
*** * * *
68367 TACGATCCCGACTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTGTATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
* *
68432 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTAAGAGCATTTGAATCGTGTTTCGA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
*
68497 TTTCATTAT
326 TTTCATTAG
* * **
68506 AAATTAATTTAGCAAAAATATGAAAAACGATACTAAAAGCGTGAAAAGTCCTGTAATCTTTTTGG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* * *
68571 CGTTACATTGTATATATTTTATGAGTATTTTATCCTAAAATTGAGGAAAAATTTATCGCAGCCAT
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
* * * * * *
68636 TTTTTTGCAAAATTTTCGCAAAAATCATGTAATAACTATCACAGTTTTTGGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
*
68701 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTTTATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
68766 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
68831 TTTCATTAG
326 TTTCATTAG
*
68840 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTTG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* * * *
68905 CGTTACACTGTATATATTATATGATTATTTTATCCAAAAATTGAGGATAAATTTATCGCGGTCA-
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
68969 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
*
69034 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGAGTCCTTGAAATATCTATATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
69099 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
69164 TTTCATTAG
326 TTTCATTAG
* *
69173 AAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAGAAGTCCTCCAATCTTTTTGG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* * * *
69238 CATTA-AAT-TATATATTTTATGAGTATTTTAACCAAAAATTGAGG-AAAATTTTTCGCGGTCA-
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
69299 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
* ** * * *
69364 CGGAGTCTTGGCTCAGTTTTGCATGATTTTTGGCATCAGGATTTCTTGAAATATCTATATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
* * * * *
69429 TAATAAAAACTTAGCCACATTGCATTTAAGGATTT-CTTTTCCCAGGCATTTGAATCTTGTTTCA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGA-GCATTTGAATCATGTTTCG
69493 ATTTCATTAG
325 ATTTCATTAG
*
69503 AAATTAATTCAAG-AAAAATACGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTG
1 AAATTAATTC-AGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTG
**
69567 GCGTTACATTGTATATATTCGATGAGTATTTTATCC-AAAATTGAGGAAAAATTTATCGCGGTCA
65 GCGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCA
* *
69631 -TTTTCTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTAGCTAAAAACGCGTT
130 TTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTT
*
69695 TCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATTTATATTCAT
195 TCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCAT
* *
69760 CTAATAGAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATATGAATCATGTTTCG
260 CTAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCG
69825 ATTTCATTAG
325 ATTTCATTAG
* *
69835 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCATGAAAAGTCCTCCAATATTTTTGG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* * * * * *
69900 CATTACATTATATATAATTTATGAGCATTTTATCCAAAAATTGAGGATACATTTATCGCGGTCA-
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
* * *
69964 TTTTTTGCAAAATTTTAGTCAAAATCGTGTACTAACTATCACGGTTTTTTGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
* * *
70029 CGGGGTCCCGACTCAGTTTTGCATGATTTTTGGCGTCAGGATTTCTTGAAATATCTATATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
* * * * * *
70094 TAATAAAAACTTAGCCACATTGCATTCAAGGATTT-CTTTTCCCAGGCATTTGAATCTTGTTTCA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGA-GCATTTGAATCATGTTTCG
70158 ATTTCATTAG
325 ATTTCATTAG
* * *
70168 AAATTAATTTAG-AAAAATATGAAAAACGATATTAAAAGCGTTAAAAGTCCTCCAATCTTTTTGC
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
* *
70232 CGTTACATTGTTTATATTTTATGAGTATTTTATCCAAAAATTGAGGATAAATTTATCGCGGTCAT
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCA-
70297 TTTTTTTGCAAAATTTTAAGTCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG
130 TTTTTTTGCAAAATTTT-AG-CCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCG
*
70362 TTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGTGTCAGGACTCCTTGAAATATCTATATTC
193 TTTCGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTC
*
70427 ATCTAATAGAAAA-TTAGCCACATTGCATTTAAGGATTTGTTTTTTCGAGCATTTGAATCATGTT
258 ATCTAATA-AAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTT
70491 TCGATTTCATTAG
322 TCGATTTCATTAG
70504 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
*
70569 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGACAAATTTATCGCGGTCAT
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
70634 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
131 TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
* * *
70699 CGGGGTCCCGGCTTAGTTTTGCATGATTTTTGGCGTCGGGACTCCTTGAAACATCTATATTCATC
196 CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
* * *
70764 TAATAAAAACATAGCCACATTGCATTTAAGGATTTGTTTTTACAAGCATTTGAATCATGTTTTGA
261 TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
70829 TTTCATTAG
326 TTTCATTAG
*
70838 AAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
1 AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
*
70903 CGTAACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
66 CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCA-
**
70968 TTTTTTTTTGCAAAATTTTA-CCAAAATCGTGTAC--A--ATCACGGTTTTTGGGCTAAAAACAT
130 --TTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTT-GGCTAAAAACGC
* * * * *
71028 G-TTCTGGGGTTCCGGCTCAGTTTT-TATTGATTTTTGGC-CCCGAGACTCCTTGACATATCTAT
192 GTTTC-GGGGTCCCGGCTCAGTTTTGCA-TGATTTTTGGCGTCAG-GACTCCTTGAAATATCTAT
* * * * * * * * **
71090 ATTCATCTAACAAAATCTCAGCCAAATTGGATTTAAGGATTTGATTTTATGGGCATCAGAATCAT
254 ATTCATCTAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCAT
*
71155 GTTTCAATTT-ATTCAG
319 GTTTCGATTTCATT-AG
** ** * * *
71171 AAATTAATTC-G-AAAAGATATAGGAAACTCGATATTTGAAGCGTGAAAA--AC-CC-TTCATTT
1 AAATTAATTCAGCAAAA-ATAT--GAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTT
* * * * ** * * *
71230 TGGCGTTGA-ATTATATATATTCTATAAGTGTTTTGGCCAAAGATTGTGGAAAAAACTT-TC-CG
63 TGGCGTT-ACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGG-AAAAATTTATCGCG
* * * * *
71292 ATCA-ATTTTTGCAAAATTTTA-CCTGAAATGGTATACTAACCATCACGGTTTTTGGCTAAAAAC
126 GTCATTTTTTTGCAAAATTTTAGCC-AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAAC
* * * * * *
71355 GCGTTCCAGGG-CCTCGGCTCAGTTTT-CAATGATTTTTGGC-CCCGAGACTCCTTGACATTTCT
190 GCGTTTCGGGGTCC-CGGCTCAGTTTTGC-ATGATTTTTGGCGTCAG-GACTCCTTGAAATATCT
** * * ** * *
71417 ATATTCATCTAACCAAATCTCAGCCTA-ATTGGTTTTAAGCATTTGATTTTACGAGCATTTGAAT
252 ATATTCATCTAATAAAAACTTAGCC-ACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAAT
* **
71481 CATGTTTCGATTTAATCGG
316 CATGTTTCGATTTCATTAG
71500 AAATTAATTC
1 AAATTAATTC
71510 GGAAACATGA
Statistics
Matches: 2732, Mismatches: 231, Indels: 86
0.90 0.08 0.03
Matches are distributed among these distances:
325 18 0.01
326 9 0.00
328 2 0.00
329 147 0.05
330 328 0.12
331 63 0.02
332 448 0.16
333 745 0.27
334 625 0.23
335 4 0.00
336 203 0.07
337 140 0.05
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (334 bp):
AAATTAATTCAGCAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGG
CGTTACATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAATTTATCGCGGTCAT
TTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTT
CGGGGTCCCGGCTCAGTTTTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCATC
TAATAAAAACTTAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCATGTTTCGA
TTTCATTAG
Done.