Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015408.1 Corchorus olitorius cultivar O-4 contig15441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78693

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
336--383
15
3.2
15
77
11
62
4
45
0
50
1.21
13294--13362
15
4.5
15
75
10
68
24
33
14
27
1.94
13308--13378
31
2.3
31
80
4
81
25
35
12
26
1.92
20985--21027
21
2.1
20
86
4
59
34
11
0
53
1.37
20988--21038
20
2.5
21
80
3
59
33
13
1
50
1.53
26214--26238
13
1.9
13
100
0
50
48
12
0
40
1.40
27470--27594
66
1.9
66
88
0
187
20
16
28
33
1.95
39529--39558
13
2.2
14
94
5
53
0
13
0
86
0.57
52213--52239
12
2.2
12
100
0
54
37
7
14
40
1.74
52461--52596
60
2.3
60
84
2
166
38
14
17
29
1.90
52484--52599
60
1.9
60
89
3
180
34
13
19
31
1.91

Tables:   1

The End!