Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015409.1 Corchorus olitorius cultivar O-4 contig15442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70847
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:17 original size:12 final size:12
Alignment explanation
Indices: 1--88 Score: 99
Period size: 12 Copynumber: 7.4 Consensus size: 12
*
1 TCTTTCTTTTCC
1 TCTTTCTTCTCC
13 TCTTTCTTC-CC
1 TCTTTCTTCTCC
24 TTCTTTCTTCTCC
1 -TCTTTCTTCTCC
37 TCTTT-TTCTCC
1 TCTTTCTTCTCC
*
48 TCTTTCTTCTCT
1 TCTTTCTTCTCC
* *
60 TCTTTCTTTTCT
1 TCTTTCTTCTCC
* *
72 TCCTTCTTCTCT
1 TCTTTCTTCTCC
84 TCTTT
1 TCTTT
89 AGCAGGTCCA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
11 13 0.19
12 52 0.78
13 2 0.03
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (12 bp):
TCTTTCTTCTCC
Found at i:1149 original size:21 final size:19
Alignment explanation
Indices: 1124--1181 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
1114 GCTGCTCTAA
1124 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* *
1145 TAATCTAATCTGTACAGTG
1 TAATCTCATCTGTACAGTC
*
1164 TAATCTCATATGTACAGT
1 TAATCTCATCTGTACAGT
1182 TGCTAAACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.48
21 17 0.52
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:24032 original size:72 final size:73
Alignment explanation
Indices: 23943--24097 Score: 215
Period size: 72 Copynumber: 2.2 Consensus size: 73
23933 CTTCCAATGA
* * * *
23943 ATTGTG-GGAAAGATCTAAAGTTTCAAGGTTGGAAAGTTGCCCAAGACTGTCTGGGATTGTCCCA
1 ATTGTGAGAAAAGATCTAAAGTTTCAAGGTTGGAAAGTTGCCCAAGACTGTCAGGAATGGTCCCA
24007 TTCAATTG
66 TTCAATTG
** * *
24015 ATTGTGAGAAAAG-TCTAAAGTTTTGAGGTTGGGAAGTTGCCCAAGACTTTCAGGAATGGTCCCA
1 ATTGTGAGAAAAGATCTAAAGTTTCAAGGTTGGAAAGTTGCCCAAGACTGTCAGGAATGGTCCCA
24079 TTCAATTG
66 TTCAATTG
*
24087 ATTGTTAGAAA
1 ATTGTGAGAAA
24098 TATAAAGGTG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
72 68 0.93
73 5 0.07
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (73 bp):
ATTGTGAGAAAAGATCTAAAGTTTCAAGGTTGGAAAGTTGCCCAAGACTGTCAGGAATGGTCCCA
TTCAATTG
Found at i:24688 original size:18 final size:18
Alignment explanation
Indices: 24667--24703 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
24657 CAAAGATGAA
24667 AGATTGGAAATCCATAGC
1 AGATTGGAAATCCATAGC
24685 AGATTGGAAATCCATAGC
1 AGATTGGAAATCCATAGC
24703 A
1 A
24704 TGTTGTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (18 bp):
AGATTGGAAATCCATAGC
Found at i:32610 original size:11 final size:11
Alignment explanation
Indices: 32594--32624 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
32584 AGTATCATTT
32594 TTATATTATTA
1 TTATATTATTA
32605 TTATATTATTA
1 TTATATTATTA
32616 TTATATTAT
1 TTATATTAT
32625 ATGATAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTATTA
Found at i:46960 original size:14 final size:14
Alignment explanation
Indices: 46943--46972 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46933 GCCTCAGAGT
46943 TAGTAGTAGGCTAG
1 TAGTAGTAGGCTAG
*
46957 TAGTAGTATGCTAG
1 TAGTAGTAGGCTAG
46971 TA
1 TA
46973 TTATTGAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (14 bp):
TAGTAGTAGGCTAG
Found at i:49243 original size:88 final size:87
Alignment explanation
Indices: 49126--49299 Score: 267
Period size: 88 Copynumber: 2.0 Consensus size: 87
49116 AAAAACAAAC
** * * * *
49126 AAGGTATAACACCGGGACATGTGGCATGATTTGGTGAATGGGGCATGAAGTGGAGCATAAAACTT
1 AAGGTATAACACAAGGACATATGACATGATTTGGTGAATGAGGCATGAAGTGGAGCACAAAACTT
*
49191 GGGGCAGGGGATTTCCATCCAT
66 GGGGCAAGGGATTTCCATCCAT
*
49213 AAGGTATAACACAAAGGACATATGACATGATTTGGTGAATGAGGCATGAAGTGGGGCACAAAACT
1 AAGGTATAACAC-AAGGACATATGACATGATTTGGTGAATGAGGCATGAAGTGGAGCACAAAACT
49278 TGGGGCAAGGGATTTCCATCCA
65 TGGGGCAAGGGATTTCCATCCA
49300 AAACAAAGAC
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
87 12 0.15
88 66 0.85
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (87 bp):
AAGGTATAACACAAGGACATATGACATGATTTGGTGAATGAGGCATGAAGTGGAGCACAAAACTT
GGGGCAAGGGATTTCCATCCAT
Found at i:53607 original size:1 final size:1
Alignment explanation
Indices: 53601--53627 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
53591 CCCTAGTTCC
53601 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
53628 CCGCTCTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:54532 original size:2 final size:2
Alignment explanation
Indices: 54525--54553 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
54515 AAATATCTTT
54525 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
54554 TACGTAAGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:64201 original size:30 final size:29
Alignment explanation
Indices: 64167--64225 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
64157 TCCCTCTATT
*
64167 TATAAAAAGGGATCAATTTGGTCCCCCTAC
1 TATAAAAA-CGATCAATTTGGTCCCCCTAC
*
64197 TATAAAAACTATCAATTTGGTCCCCCTAC
1 TATAAAAACGATCAATTTGGTCCCCCTAC
64226 CTACAATTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (29 bp):
TATAAAAACGATCAATTTGGTCCCCCTAC
Found at i:64594 original size:30 final size:30
Alignment explanation
Indices: 64524--64599 Score: 111
Period size: 29 Copynumber: 2.6 Consensus size: 30
64514 TGATACCAAA
*
64524 TTATAAGTAGAGGGATCAAATTGACAGTTT
1 TTATAAGTAGAGGGACCAAATTGACAGTTT
*
64554 TTAT-AGTAGAGGGACCAAATTGATC-TTTT
1 TTATAAGTAGAGGGACCAAATTGA-CAGTTT
64583 TTATAAGTAGAGGGACC
1 TTATAAGTAGAGGGACC
64600 TGTACGGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (30 bp):
TTATAAGTAGAGGGACCAAATTGACAGTTT
Found at i:68421 original size:334 final size:332
Alignment explanation
Indices: 67557--70833 Score: 3756
Period size: 334 Copynumber: 10.0 Consensus size: 332
67547 TTGAATCGAC
* * *
67557 AAACTAAGTCGGGGCCCC-GAAACACGCGTTTTTAGCAAAAAACAGTGACG-CAGTACACGATTT
1 AAACTAAGTCGGGGCCCCAG-AAC-CGCGTTTTTAGCAAAAAACTGTGATGTTAGTACACGATTT
* * * *
67620 CGGCCAAAATTTTGCAAAAAATATCCCGGAAAATTTTTCCTCAATTTTTGCCCACAATACTAATA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATA
*
67685 AAAAATATGTAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATAT-A--------
129 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCT
*
67741 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTTAGATGCTCGTAAAAAATTATT-CT
194 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTCCT
* *
67805 TAAATCCATTGCGGCTGAGATTTGGTTAGATGAATATAAATATATTAAGGAGTCTTGCTGCCAAA
259 TAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
67870 AATCATGCA
324 AATCATGCA
** * *
67879 AAACTAAGTCAAGGCCCCAGAACGCGCGTTTTTAGCAAAAAACAGTGATGGTTAGTACA-AATTT
1 AAACTAAGTCGGGGCCCCAGAAC-CGCGTTTTTAGCAAAAAACTGTGAT-GTTAGTACACGATTT
* * **
67943 CGACCAAAATTTTGCAAAAACTATCCCGAAAATTTTTTCCTCAATTAATGGCCACAATACTCATA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATA
* *
68008 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATAATTTTTACT
129 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCT
* *
68073 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTGAGATGCTCGTAAAAAATTATTCTT
194 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTCCT
* * *
68138 TTAATCCATTGTGGCTGAGATTTGGTTAGATGAATAAAAATATTTTACGGAGTCTTGCTGCCAAA
259 TAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
*
68203 AATAATGCA
324 AATCATGCA
*
68212 AAACTAAGTCGAGGCCCCAGAACGCGCGTTTTTAGCAAAAAACTGTGATGGTTAGTACACGATTT
1 AAACTAAGTCGGGGCCCCAGAAC-CGCGTTTTTAGCAAAAAACTGTGAT-GTTAGTACACGATTT
* ** *
68277 CGGCCAAAATTTTGCAAAAACTATCCTGAAAAATTTTTCCTCAATTTTTATCCATAATACTCATA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATA
*
68342 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAAGCTTCTAATATCATTTTTCCT
129 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCT
* * **
68407 ATTTTTCTGAATTAATTTCTAACTAAATCGAAACATAATTCAGATGCTCGTAAAACCTTA-TCCT
194 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTCCT
* * * **
68471 TAAATCTATTATGGCTGAGATTTGGTTAGATGAATATAGATATTTTAAGGAGTCTTGCTATCAAA
259 TAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
* *
68536 AATCATCCG
324 AATCATGCA
** * * * * * * *
68545 AAACTGTGCCGGGG-CTCAGTAA-CGCATTTTTAGCCAAAAACAGTTATGTAACGTACACGATTT
1 AAACTAAGTCGGGGCCCCAG-AACCGCGTTTTTAGCAAAAAACTGTGATGTTA-GTACACGATTT
* * *
68608 CGGCCAAAATTTTGCAAAAATTGTCCCGAAAAACTTTTCCTCAATTTTTGGCCACAA-ACTCATA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATA
* * ** * * ** * * *
68672 AAAATTATATAATTCAAATCC-ATAAAGACTGAAGGGCTTTAGACGCTTC-AATTATCGTTTTCC
129 AAAAATATATAACTCAACGCCAATAAA-ATTTAAGGGCTTTTCAGGCTTCTAA-TATCATTTTTC
* * *
68735 CTATTTTTTCCGAATTACTTTCTAATTAAATCGAAACATAATTCAGATGCTCATAAAAACA--AA
192 CTA-TTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAA-ATTAT
* * * * * * **
68798 TCCTTAAATCCAATGTGGCTGAGAATTGGTTAGATGAATATAGATATCTCAATGACACTTGGC-G
255 TCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTT-GCTG
*
68862 CCAAAGATCATGCA
319 CCAAAAATCATGCA
** * * *
68876 AAACTGTGCCGGGGCCCAAGAA-CGCGTTTTTAGACCAAAAACTGTGATTGTTAGTACACGATTT
1 AAACTAAGTCGGGGCCCCAGAACCGCGTTTTTAG-CAAAAAACTGTGA-TGTTAGTACACGATTT
* * * *
68940 CGGCCAAAATTTTGCGAAAACTGTCCCGTGAAAA-TTTTCCTCAATTTTTGGCCAAAATACTCAT
64 CGGCCAAAATTTTGCAAAAACTATCCCG-AAAAATTTTTCCTCAATTTTTGGCCACAATACTCAT
* *
69004 AAATAATATATAACTCAACGCCAATAAAATTTAAGGGCCTTTCAGGCTTCT-A-AT-A----T-C
128 AAAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCC
* * *
69061 -ATTTTTCCGAATTAATTTCTAATTAAATCGAAAATATAATTTAGATGCTCGTCAAAAATTATT-
193 TATTTTTCCGAATTAATTTCTAATTAAATCG-AAACATAATTCAGATGCTCGTAAAAAATTATTC
*
69124 CTTAAATCCATTGTGGCTGAGATTAGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCA
257 CTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCA
*
69189 AAAATCATGTA
322 AAAATCATGCA
* * *
69200 AAACTATGTCGGGGCCCCATAACACGCGTTTTTAGCAAAAAACAGTGATG---GTACACGATTTC
1 AAACTAAGTCGGGGCCCCAGAAC-CGCGTTTTTAGCAAAAAACTGTGATGTTAGTACACGATTTC
** *
69262 GGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTACCCATAATACTCATGA
65 GGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCAT-A
* * * *
69327 AAAAATATATAACTCTACGCCAATGAAATTTAAGGGTTTTTTAGGCTTCT-A-AT-A---TT--T
129 AAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCT
* * *
69384 -TTTTTCCGAATTAATTTCTAATTATATCGAAACATAATTCAGATGCTTGTAAACAATTATT-CT
194 ATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTCCT
* *
69447 TAAATCCATTGTGGCTGAGATTT-GTTAGATAAATATAAATATTTTAAGGAGTCTTGCGGCCAAA
259 TAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
69511 AATCATGCA
324 AATCATGCA
* * *
69520 AAACTAAGTCGGGGCCCCAGAATGCGCGTTTTTAGCAATAAAC----A-GTGA-TACACGATTTC
1 AAACTAAGTCGGGGCCCCAGAA-CCGCGTTTTTAGCAAAAAACTGTGATGTTAGTACACGATTTC
**
69579 AACCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATAA
65 GGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATAA
* * * * * *
69644 AAAATATGTAACTCAACGCCACTAAAATGTAATGGCTTTTCAGGCTTCTAATATAATATTTCCTA
130 AAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCTA
* * *
69709 TTATTCTGAATTAATTTCTAATTAAATCGAAACATAAATT-AGATGCTCGTAAAAAAATA-TCCT
195 TTTTTCCGAATTAATTTCTAATTAAATCGAAACAT-AATTCAGATGCTCGTAAAAAATTATTCCT
* * * *
69772 TTAATCTATTGTGGCTGATATTTGGTTACATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
259 TAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAA
*
69837 AGTCATGCA
324 AATCATGCA
* *
69846 AAACTAAGTCGGGGCCCCAGAACGCGTGTTTTTAGCAAAAAACTGTTATGATTAGTACACGATTT
1 AAACTAAGTCGGGGCCCCAGAAC-CGCGTTTTTAGCAAAAAACTGTGATG-TTAGTACACGATTT
* * ** *
69911 CGGCCAAAATTTTGCAAAAACTGTCCCG-AAATTTTTGTTTTCAAATTTTTGGCCACAATACTTA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTT-TCCTC-AATTTTTGGCCACAATACTCA
* * *
69975 TAAAAAATATATAACTCAACGCCAATAAAGTTTAAGGGCTTATCAGGCTTCTAATATCAATTTTC
127 TAAAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTC
* **
70040 CTATTTTTCCGAATTAATTTCTAACTAAATCGAAACATAATTCAGATGCTCGTAAAACCTTA-TC
192 CTATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTC
* * * * ** * * **
70104 CTTCAATCTACTATGGCTGAGATTTCTTTAGATGAATATAGATATTGTAAGGAGTCTTGCTATCA
257 CTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCA
*
70169 AAAATCATCCA
322 AAAATCATGCA
** * * * *
70180 AAACTGTGTCGGGG-CCCAGGAA-CGCGTTTTTATC-AAAAACTGTAATGTAATGTACATGATTT
1 AAACTAAGTCGGGGCCCCA-GAACCGCGTTTTTAGCAAAAAACTGTGATGTTA-GTACACGATTT
* * * * * * * *
70242 CGGCCAAAATTTTACAAAAATTGTCCAGAAAGACTTTTCCTCAAATTTTGGCCACAA-ACGCATA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATA
* * ** * * ** *
70306 AAAATTATATAATTCAAATCCAA-AAAGACTGAAGGGCTTTAGAGGCTTC-AATTATCGTTTTTC
129 AAAAATATATAACTCAACGCCAATAAA-ATTTAAGGGCTTTTCAGGCTTCTAA-TATCATTTTTC
* * * * *
70369 CTATTTTTTCCG-ATATACTTTCTAATTAAATCGAAATATAATTCAGCTGCTCATAAAAACA-AA
192 CTA-TTTTTCCGAAT-TAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAA-ATTA
* * * * * * * * **
70432 TT-CATAAATTCAATGTGGCGGAGAATTGGTTAGATGAATATAGATATTTCAATGACACTTGGC-
254 TTCCTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTT-GCT
*
70495 GCCAAAGATCATG--
318 GCCAAAAATCATGCA
** * *
70508 ---CTGTGTCGGGGCCCAAGAA-CGCGTTTTTAGCCAAAAACTGTGATAGTTTAGTACACGATTT
1 AAACTAAGTCGGGGCCCCAGAACCGCGTTTTTAGCAAAAAACTGTGAT-G-TTAGTACACGATTT
* * * * *
70569 CGGCCAAAATTTTGCGAAAATTGTCCCGAAAATTTTTTTCC-CAAATTTTTAGCCACAATACTCA
64 CGGCCAAAATTTTGCAAAAACTATCCCGAAAA-ATTTTTCCTC-AATTTTTGGCCACAATACTCA
* *
70633 TAAAAAATATATAAGTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTA
127 TAAAAAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTC
* **
70698 CTATTTTTCCGAATTAATTTCTAACTAAATCGAAACATAATTCAGATGCTCGTAAAACCTTA-TC
192 CTATTTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTC
* * * * * * **
70762 CTGAAATCTATTATGGCTGAG-GTTGGTTAGAGGAATATAGATATTTTAAGGAGTCTTGCTATCA
257 CTTAAATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCA
70826 AAAATCAT
322 AAAATCAT
70834 CCGAAACTGT
Statistics
Matches: 2522, Mismatches: 344, Indels: 173
0.83 0.11 0.06
Matches are distributed among these distances:
315 1 0.00
316 44 0.02
317 70 0.03
318 2 0.00
319 1 0.00
320 89 0.04
321 115 0.05
322 122 0.05
323 149 0.06
324 114 0.05
325 109 0.04
326 116 0.05
327 80 0.03
328 87 0.03
329 118 0.05
330 178 0.07
331 275 0.11
332 164 0.07
333 298 0.12
334 390 0.15
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.33
Consensus pattern (332 bp):
AAACTAAGTCGGGGCCCCAGAACCGCGTTTTTAGCAAAAAACTGTGATGTTAGTACACGATTTCG
GCCAAAATTTTGCAAAAACTATCCCGAAAAATTTTTCCTCAATTTTTGGCCACAATACTCATAAA
AAATATATAACTCAACGCCAATAAAATTTAAGGGCTTTTCAGGCTTCTAATATCATTTTTCCTAT
TTTTCCGAATTAATTTCTAATTAAATCGAAACATAATTCAGATGCTCGTAAAAAATTATTCCTTA
AATCCATTGTGGCTGAGATTTGGTTAGATGAATATAAATATTTTAAGGAGTCTTGCTGCCAAAAA
TCATGCA
Done.