Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001541.1 Corchorus olitorius cultivar O-4 contig01541, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Found at i:815 original size:58 final size:58

Alignment explanation


    Indices: 712--821  Score: 168
    Period size: 58  Copynumber: 1.9  Consensus size: 58

        702 ATAGCATCAT

                      *                                               
        712 GCCTCGGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCCATAA
          1 GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCCATAA

                       *               *             *           
        770 GCCTCGGTCCGGAAACGTCTTTTTTTATGCATCTAAT-AAAGAACATGTCACT
          1 GCCTCGGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAAACATGTCACT

        822 TGATATTTGA


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
  58   31  0.66
  59   16  0.34

ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31


Consensus pattern (58 bp):   
GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCCATAA
Done.