Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015411.1 Corchorus olitorius cultivar O-4 contig15444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105894

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--4636
333
14.2
327
82
5
5338
34
17
14
32
1.91
1--4636
654
7.1
650
83
5
5204
34
17
14
32
1.91
5321--5965
345
1.9
345
80
4
755
36
16
14
32
1.89
6174--6619
236
1.9
235
82
5
569
38
17
15
29
1.90
10268--10316
26
1.9
26
88
12
75
42
0
0
57
0.99
14322--14351
2
15.0
2
100
0
60
50
0
0
50
1.00
33025--33088
21
3.2
20
82
10
85
37
12
20
29
1.89
44012--44067
27
2.1
27
96
0
103
41
16
19
23
1.90
47156--47218
30
2.1
30
96
0
117
46
23
14
15
1.83
48053--48126
3
25.0
3
94
2
132
31
0
0
68
0.89
48612--48639
10
2.8
10
100
0
56
10
35
32
21
1.88
48913--48962
17
2.9
16
80
11
55
36
18
22
24
1.95
51060--51091
1
32.0
1
100
0
64
100
0
0
0
0.00
60083--60166
34
2.4
35
80
7
91
39
15
13
32
1.86
78794--78821
13
2.2
13
100
0
56
0
0
28
71
0.86
79843--79895
26
2.0
26
88
0
79
60
5
7
26
1.46
81353--81392
20
2.0
20
95
0
71
40
17
10
32
1.83
81435--81600
60
2.8
60
88
0
242
25
24
19
31
1.98
81437--81613
31
5.8
31
70
10
132
27
23
19
30
1.98
102005--102030
13
2.0
13
100
0
52
30
23
23
23
1.99

Tables:   1

The End!