Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015412.1 Corchorus olitorius cultivar O-4 contig15445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15618
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:463 original size:1 final size:1

Alignment explanation


    Indices: 457--485  Score: 58
    Period size: 1  Copynumber: 29.0  Consensus size: 1

        447 CATTAGTGAT

                                         
        457 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

        486 CAAGGAAAAG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   28  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Found at i:1401 original size:25 final size:25

Alignment explanation


    Indices: 1354--1401  Score: 60
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       1344 ACTAGTCTGT

                        *   * *      
       1354 ATTTAATTACCTCATACATTTTTAC
          1 ATTTAATTACCTAATAAACTTTTAC

                    *              
       1379 ATTTAATTTCCTAATAAACTTTT
          1 ATTTAATTACCTAATAAACTTTT

       1402 TAGTTAAAAT


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  25   19  1.00

ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50


Consensus pattern (25 bp):   
ATTTAATTACCTAATAAACTTTTAC
Done.