Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015416.1 Corchorus olitorius cultivar O-4 contig15449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106626
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:1273 original size:640 final size:635
Alignment explanation
Indices: 1--1723 Score: 2647
Period size: 640 Copynumber: 2.7 Consensus size: 635
* *
1 TTTTGGCCACAATACTCATAAAAAATGTATAATTCAACACCAAAAACATTGAAGGGCTTTCACGC
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGC
* * *
66 TTCTAATAACATTTTTCCTATTTTTGCCGAATTTTTTTGAAACATGATTCAAATGCTACTAAAAA
66 TTCTAATAA-GTTTTTCCTATTTTTGCCGAA-TTTATTGAAACATGATTCAAATGCTCCTAAAAA
* * *
131 TAAATACTTAATTCCGTTGTGACTGATATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTC
129 TAAATCCTTAATTCCATTGTGACTGAAATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTC
*
196 AAGCCAAAACTCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTATCCAAGAAC-TG-T-G
194 AAGCCAAAACTCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTATCCAAGAACGTGATGG
* * *
258 --ACGTACACGATTTCGCCGAATTCCGAAAAAACTGTCACGAAAATTTTTTTCGTCAGTTTTTGG
259 TTA-GTACACGATTTCGCCGAATTCCGAAAAAACTGACACGAAAATTTTTTTCCTCA-ATTTTGG
*
321 CCACAATACTCATAAAAAATGTATAATTAAGCACCAAAAAGATTGAAGGGCTTTTT-ACGCTTCT
322 CCACAATACTCATAAAAAATGTATAATTAAACACCAAAAAGATTGAAGGG-TTTTTCACGCTTCT
* * * *
385 AATAACGGTTTTCCTATTTTTGTCGAATTAGTCGAAACATGATTCAGATACTCCTAAAAATAAAT
386 AATAACGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAAT
450 CCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACGCC
451 CCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACGCC
515 AAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCACTTTTAGCCAAAAATCGTGATGGTTAG
516 AAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCACTTTTAGCCAAAAATCGTGATGGTTAG
580 TACACAATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
581 TACACAATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
* * **
635 TTTTGGCCACAATACTCATGAAAAATGTATAATACAATACCAAAAAGATTGAAGTGTTTTTCACG
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAG-GGCTTTCACG
*
700 CTTCTAATAATGTTTTTTCCTATTTTTGCCGAATTTATTGAAACATGATTCAGATGCTCCTAAAA
65 CTTCTAATAA-G-TTTTTCCTATTTTTGCCGAATTTATTGAAACATGATTCAAATGCTCCTAAAA
* * * * * *
765 ATAAATCCTTAAATCCAATGTGGCTGAAATTTTGTTAGATTAATATAGATATATCAATGAGTCTT
128 ATAAATCCTTAATTCCATTGTGACTGAAATTTTGTTAGATTAATATGGATATTTCTATGAGTCTT
* * * ** * *
830 GACGCCAAAAATCATGCAAAACTGAGAAGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGAT
193 CAAGCCAAAACTCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTATCCAAGAA-CGTGAT
* * * * * *
895 GGTTAGGACACGATTTAGTCGAAATT-TGAAAAAAATTGACACG-AAATTATTTTCCTCAATTTT
257 GGTTAGTACACGATTTCGCCG-AATTCCG-AAAAAACTGACACGAAAATTTTTTTCCTCAATTTT
* * *
958 GGTCACAGTACTCATAAAAAAATGTATAATTAAACACCAAAGAGATTGAAGGGTTTTTCACGCTT
320 GGCCACAATACTCAT-AAAAAATGTATAATTAAACACCAAAAAGATTGAAGGGTTTTTCACGCTT
1023 CTAATAACGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAA
384 CTAATAACGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAA
1088 ATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACG
449 ATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACG
*
1153 CCAAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCGCTTTTAGCCAAAAATCGTGATGGTT
514 CCAAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCACTTTTAGCCAAAAATCGTGATGGTT
*
1218 AGTACACGATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
579 AGTACACAATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
1275 TTTTGGCCA-AATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGC
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGC
*
1339 TTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAAATGCTCCTAAAAAT
66 TTCTAATAA-GTTTTTCCTATTTTTGCCGAATTTATTGAAACATGATTCAAATGCTCCTAAAAAT
** *
1404 AAATCCTTAATTCCATTGTGAAAGAGATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTCA
130 AAATCCTTAATTCCATTGTGACTGAAATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTCA
* * * *
1469 TGCCAAAACTCATGCAAAACTGAGTCGGGGTCCCGAAACGCATTTTTATCCAAGAACTGTGATGG
195 AGCCAAAACTCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTATCCAAGAAC-GTGATGG
* *
1534 TTAGTACACAATTTCGCCGAATTCCGAAAAAACTGGCACGAAAATTTTTTTCCTCAATTTTTGGC
259 TTAGTACACGATTTCGCCGAATTCCGAAAAAACTGACACGAAAATTTTTTTCCTCAA-TTTTGGC
* * * * * *
1599 CACAATACTTATAAAAAATGTACAATTCAACACCAAAAAGATTGAGGGGCTTTTCACGTTTCTAA
323 CACAATACTCATAAAAAATGTATAATTAAACACCAAAAAGATTGAAGGGTTTTTCACGCTTCTAA
* * **
1664 TAACGTTTTTCCTATTTTTACCGAATTAATC-CAATTTGATTCAGATGCTCCTAAAAATAA
388 TAACGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAA
1724 TTTCGTCGAA
Statistics
Matches: 979, Mismatches: 94, Indels: 30
0.89 0.09 0.03
Matches are distributed among these distances:
634 50 0.05
635 153 0.16
636 64 0.07
637 271 0.28
638 36 0.04
639 65 0.07
640 323 0.33
641 17 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (635 bp):
TTTTGGCCACAATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGC
TTCTAATAAGTTTTTCCTATTTTTGCCGAATTTATTGAAACATGATTCAAATGCTCCTAAAAATA
AATCCTTAATTCCATTGTGACTGAAATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTCAA
GCCAAAACTCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTATCCAAGAACGTGATGGTT
AGTACACGATTTCGCCGAATTCCGAAAAAACTGACACGAAAATTTTTTTCCTCAATTTTGGCCAC
AATACTCATAAAAAATGTATAATTAAACACCAAAAAGATTGAAGGGTTTTTCACGCTTCTAATAA
CGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTA
AATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACGCCAAAAA
TCATGCAAAACTGAGTCTGGGCCCCGGAATGCACTTTTAGCCAAAAATCGTGATGGTTAGTACAC
AATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
Found at i:1484 original size:318 final size:318
Alignment explanation
Indices: 1--1723 Score: 2292
Period size: 319 Copynumber: 5.4 Consensus size: 318
* *
1 TTTTGGCCACAATACTCATAAAAAATGTATAATTCAACACCAAAAACATTGAAGGGCTTTCACGC
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAACACCAAAAAGATTGAAGGGCTTTCACGC
* * * * *
66 TTCTAATAACATTTTTCCTATTTTTGCCGAATTTTTTTGAAACATGATTCAAATGCTACTAAAAA
66 TTCTAATAACGTTTTTCCTATTTTTGCCGAA-TTTATCGAAACATGATTCAGATGCTCCTAAAAA
* * * * * * *
131 TAAATACTTAATTCC-GTTGTGACTGATATTTTGTTAGATTAATATGGATATTTCTATGAGTCTT
130 TAAATCCTTAAATCCAG-TGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTT
* * * * * *
195 CAAGCCAAAACTCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTATCCAAGAA-C-TG-T
194 GACGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGAT
** ** * * * *
257 -G--ACGTACACGATTTCGCCGAATTCCG-AAAAAACTGTCACGAAAATTTTTTTCGTCAGT
259 GGTTA-GTACACGATTTCATCGAATTTTGAAAAAAATTGACACG-AAATTTTTTTCCTCAAT
* *
315 TTTTGGCCACAATACTCATAAAAAATGTATAATTA-AGCACCAAAAAGATTGAAGGGCTTTTTAC
1 TTTTGGCCACAATACTCATAAAAAATGTATAA-TACAACACCAAAAAGATTGAAGGGC-TTTCAC
* * *
379 GCTTCTAATAACGGTTTTCCTATTTTTGTCGAA-TTAGTCGAAACATGATTCAGATACTCCTAAA
64 GCTTCTAATAACGTTTTTCCTATTTTTGCCGAATTTA-TCGAAACATGATTCAGATGCTCCTAAA
*
443 AATAAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTT
128 AATAAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCT
* * **
508 TGACGCCAAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCACTTTTAGCCAAAAATCGTGA
193 TGACGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGA
*
573 TGGTTAGTACACAATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
258 TGGTTAGTACACGATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTT-TTTCCTCAAT
* * **
635 TTTTGGCCACAATACTCATGAAAAATGTATAATACAATACCAAAAAGATTGAAGTGTTTTTCACG
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAACACCAAAAAGATTGAAG-GGCTTTCACG
* *
700 CTTCTAATAATGTTTTTTCCTATTTTTGCCGAATTTATTGAAACATGATTCAGATGCTCCTAAAA
65 CTTCTAATAACG-TTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAGATGCTCCTAAAA
* * * *
765 ATAAATCCTTAAATCCAATGTGGCTGAAATTTTGTTAGATTAATATAGATATATCAATGAGTCTT
129 ATAAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTT
**
830 GACGCCAAAAATCATGCAAAACTGAGAAGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGAT
194 GACGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGAT
* * *
895 GGTTAGGACACGATTT-AGTCGAAATTTGAAAAAAATTGACACGAAATTATTTTCCTCAA-
259 GGTTAGTACACGATTTCA-TCGAATTTTGAAAAAAATTGACACGAAATTTTTTTCCTCAAT
* * * *
954 TTTTGGTCACAGTACTCATAAAAAAATGTATAATTA-AACACCAAAGAGATTGAAGGGTTTTTCA
1 TTTTGGCCACAATACTCAT-AAAAAATGTATAA-TACAACACCAAAAAGATTGAAGGG-CTTTCA
*
1018 CGCTTCTAATAACGTTTTTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAA
63 CGCTTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAGATGCTCCTAAA
*
1083 AATAAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTT
128 AATAAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCT
* * *
1148 TGACGCCAAAAATCATGCAAAACTGAGTCTGGGCCCCGGAATGCGCTTTTAGCCAAAAATCGTGA
193 TGACGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGA
1213 TGGTTAGTACACGATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAAT
258 TGGTTAGTACACGATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTT-TTTCCTCAAT
* *
1275 TTTTGGCCA-AATACTCATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGC
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAACACCAAAAAGATTGAAGGGCTTTCACGC
*
1339 TTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAAATGCTCCTAAAAAT
66 TTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAGATGCTCCTAAAAAT
* * ** * * *
1404 AAATCCTTAATTCCATTGTGAAAGAGATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTCA
131 AAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGA
* * * * * * *
1469 TGCCAAAACTCATGCAAAACTGAGTCGGGGTCCCGAAACGCATTTTTATCCAAGAA-CTGTGATG
196 CGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATC-GTGATG
* ** ** * *
1533 GTTAGTACACAATTTCGCCGAATTCCG-AAAAAACTGGCACGAAAATTTTTTTCCTCAAT
260 GTTAGTACACGATTTCATCGAATTTTGAAAAAAATTGACACG-AAATTTTTTTCCTCAAT
* * * *
1592 TTTTGGCCACAATACTTATAAAAAATGTACAATTCAACACCAAAAAGATTGAGGGGCTTTTCACG
1 TTTTGGCCACAATACTCATAAAAAATGTATAATACAACACCAAAAAGATTGAAGGGC-TTTCACG
* * * * **
1657 TTTCTAATAACGTTTTTCCTATTTTTACCGAATTAATC-CAATTTGATTCAGATGCTCCTAAAAA
65 CTTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAGATGCTCCTAAAAA
1721 TAA
130 TAA
1724 TTTCGTCGAA
Statistics
Matches: 1248, Mismatches: 133, Indels: 52
0.87 0.09 0.04
Matches are distributed among these distances:
313 2 0.00
314 179 0.14
315 38 0.03
316 2 0.00
317 33 0.03
318 278 0.22
319 333 0.27
320 162 0.13
321 218 0.17
322 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (318 bp):
TTTTGGCCACAATACTCATAAAAAATGTATAATACAACACCAAAAAGATTGAAGGGCTTTCACGC
TTCTAATAACGTTTTTCCTATTTTTGCCGAATTTATCGAAACATGATTCAGATGCTCCTAAAAAT
AAATCCTTAAATCCAGTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGA
CGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGG
TTAGTACACGATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTTTTCCTCAAT
Found at i:1843 original size:178 final size:179
Alignment explanation
Indices: 1574--1901 Score: 550
Period size: 178 Copynumber: 1.8 Consensus size: 179
1564 AACTGGCACG
* *
1574 AAAATTTTTTTCCTCAATTTTTGGCCACAATACTTATAAAAAATGTACAATTCAACACCAAAAAG
1 AAAATTATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAATGTACAATTCAACACCAAAAAG
* * **
1639 ATTGAGGGGCTTTTCACGTTTCTAATAACGTTTTTCCTATTTTTACCGAATTAATCCAATTTGAT
66 ATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTTCCTATTTTTACCGAATTAATCCAACATGAT
1704 TCAGATGCTCCTAAAAATAATTTCGTCGAATTTTGAAAAAAAATTACAC
131 TCAGATGCTCCTAAAAATAATTTCGTCGAATTTTGAAAAAAAATTACAC
* *
1753 AAAATTATTTTCCTCAATTTTTGGCCACAATACTCAT-AAAAATGTATAATTCAACACCAAAGAG
1 AAAATTATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAATGTACAATTCAACACCAAAAAG
* *
1817 ATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTTCCTATTTTTGCCGAATTAATCGAACATGAT
66 ATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTTCCTATTTTTACCGAATTAATCCAACATGAT
*
1882 TCATATGCTCCTAAAAATAA
131 TCAGATGCTCCTAAAAATAA
1902 ATCCTTAAAT
Statistics
Matches: 138, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
178 103 0.75
179 35 0.25
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (179 bp):
AAAATTATTTTCCTCAATTTTTGGCCACAATACTCATAAAAAATGTACAATTCAACACCAAAAAG
ATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTTCCTATTTTTACCGAATTAATCCAACATGAT
TCAGATGCTCCTAAAAATAATTTCGTCGAATTTTGAAAAAAAATTACAC
Found at i:2166 original size:496 final size:498
Alignment explanation
Indices: 1226--2220 Score: 1416
Period size: 496 Copynumber: 2.0 Consensus size: 498
1216 TTAGTACACG
* *
1226 ATTTCATCGAATTTTGAAAAAAATTGACACGAAATTTTATTTCCTCAATTTTTGGCCAAATACTC
1 ATTTCATCGAATTTTGAAAAAAATTGACACAAAATTATATTTCCTCAATTTTTGGCCAAATACTC
*
1291 ATAAAAAATGTATAATACAATACCAAAAACATTGAAGGGCTTTCACGCTTCTAATAACGTTTTTC
66 ATAAAAAATGTATAATACAACACCAAAAACATTGAAGGGCTTTCACGCTTCTAATAACGTTTTTC
* * *
1356 CTATTTTTGCCGAATTTATCGAAACATGATTCAAATGCTCCTAAAAATAAATCCTTAATTCCATT
131 CTATTTTTGCCGAATTAATCGAAACATGATTCAAATGCTCCTAAAAATAAATCCTTAAATCCAGT
* * * *
1421 GTGAAAGAGATTTTGTTAGATTAATATGGATATTTCTATGAGTCTTCATGCCAAAACTCATGCAA
196 GTGAAAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTCACGCCAAAAATCATGCAA
* * * * *
1486 AACTGAGTCGGGGTCCCGAAACGCATTTTTATCCAAGAACTGTGATGGTTAGTACACAATTTCGC
261 AACTAAGTCGAGGTCCCGAAACGCATTTTTAGCCAAAAACTGTGATGATTAGTACACAATTTCGC
* * * * *
1551 CGAATTCCGAAAAAACTGGCACGAAAATTTTTTTCCTCAATTTTTGGCCACAATACTTATAAAAA
326 CGAATTCCGAAAAAACTGACACGAAAACTATTTTCCTAAATTTTTGGCCACAATACTCATAAAAA
* * *
1616 ATGTACAATTCAACACCAAAAAGATTGAGGGGCTTTTCACGTTTCTAATAACGTTTTTCCTATTT
391 ATGTACAATTCAACACCAAAAAGATTGAGCGGCTTTTCACGCTTATAATAACGTTTTTCCTATTT
*
1681 TTACCGAATTAATCCAAT-TTGATTCAGATGCTCCTAAAAATA
456 TTACCGAATTAATCCAATCATGATTCAGATGCTCCTAAAAATA
*
1723 ATTTCGTCGAATTTTGAAAAAAAATT-ACACAAAATTAT-TTTCCTCAATTTTTGGCCACAATAC
1 ATTTCATCGAATTTTG-AAAAAAATTGACACAAAATTATATTTCCTCAATTTTTGGCCA-AATAC
* * *
1786 TCAT-AAAAATGTATAATTCAACACCAAAGAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTT
64 TCATAAAAAATGTATAATACAACACCAAAAACATTGAAGGGC-TTTCACGCTTCTAATAACGTTT
* *
1850 TTCCTATTTTTGCCGAATTAATCG-AACATGATTCATATGCTCCTAAAAATAAATCCTTAAATCT
128 TTCCTATTTTTGCCGAATTAATCGAAACATGATTCAAATGCTCCTAAAAATAAATCCTTAAATCC
** * * *
1914 AGTGTCG-CTGAGATTTTTTTAGATTAATATATATATTTCAATGAGTCTTGACGCCAAAAATCAT
193 AGTGT-GAAAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTCACGCCAAAAATCAT
* * *
1978 GCAAAACTAAGTCGAGG-CACCGGAATGCGTTTTTAGCCAAAAA-TCGTGATGATTAGTACA-AG
257 GCAAAACTAAGTCGAGGTC-CCGAAACGCATTTTTAGCCAAAAACT-GTGATGATTAGTACACA-
* ** *
2040 ATTTCGTCGAATTTTGAAAAAAATTGACAC-AAAACTATTTTCCTAAATTTTTGGCCACAATACT
319 ATTTCGCCGAATTCCG-AAAAAACTGACACGAAAACTATTTTCCTAAATTTTTGGCCACAATACT
* * *
2104 CATAAAAAGTGTATAATTTAACACCAAAAAGATTGAGCGGCTTTTCACGCTTATAATAACGTTTT
383 CATAAAAAATGTACAATTCAACACCAAAAAGATTGAGCGGCTTTTCACGCTTATAATAACGTTTT
* **
2169 TCCTATTTTTGCCGAATTAATTGAATCATGATTCAGATGCTCCTAAAAATA
448 TCCTATTTTTACCGAATTAATCCAATCATGATTCAGATGCTCCTAAAAATA
2220 A
1 A
2221 ATCCTTAAAT
Statistics
Matches: 441, Mismatches: 48, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
495 3 0.01
496 314 0.71
497 115 0.26
498 9 0.02
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (498 bp):
ATTTCATCGAATTTTGAAAAAAATTGACACAAAATTATATTTCCTCAATTTTTGGCCAAATACTC
ATAAAAAATGTATAATACAACACCAAAAACATTGAAGGGCTTTCACGCTTCTAATAACGTTTTTC
CTATTTTTGCCGAATTAATCGAAACATGATTCAAATGCTCCTAAAAATAAATCCTTAAATCCAGT
GTGAAAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTCACGCCAAAAATCATGCAA
AACTAAGTCGAGGTCCCGAAACGCATTTTTAGCCAAAAACTGTGATGATTAGTACACAATTTCGC
CGAATTCCGAAAAAACTGACACGAAAACTATTTTCCTAAATTTTTGGCCACAATACTCATAAAAA
ATGTACAATTCAACACCAAAAAGATTGAGCGGCTTTTCACGCTTATAATAACGTTTTTCCTATTT
TTACCGAATTAATCCAATCATGATTCAGATGCTCCTAAAAATA
Found at i:2729 original size:319 final size:319
Alignment explanation
Indices: 1723--5147 Score: 4786
Period size: 319 Copynumber: 10.8 Consensus size: 319
1713 CCTAAAAATA
*
1723 ATTTCGTCGAATTTTGAAAAAAAATT-ACACAAAATTATTTTCCTCAATTTTTGGCCACAATACT
1 ATTTCGTCGAATTTTG-AAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACT
*
1787 CAT-AAAAATGTATAATTCAACACCAAAGAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
65 CATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
* *
1851 TCCTATTTTTGCCGAATTAATCG-AACATGATTCATATGCTCCTAAAAATAAATCCTTAAATCTA
130 TCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
* * *
1915 GTGTCGCTGAGATTTTTTTAGATTAATATATATATTTCAATGAGTCTTGACGCCAAAAATCATGC
195 GTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGC
* * * * * *
1980 AAAACTAAGTCGAGGCACCGGAATGCGTTTTTAGCCAAAAATCGTGATGATTAGTACAAG
260 AAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* * *
2040 ATTTCGTCGAATTTTGAAAAAAATTGACACAAAACTATTTTCCTAAATTTTTGGCCACAATACTC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
* * *
2105 ATAAAAAGTGTATAATTTAACACCAAAAAGATTG-AGCGGCTTTTCACGCTTATAATAACGTTTT
66 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAG-GGCTTTTCACGCTTCTAATAACGTTTT
* *
2169 TCCTATTTTTGCCGAATTAATTGAATCATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
130 TCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
2234 GTGTGGCTGAGATCTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
195 GTGTGGCTGAGAT-TTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
2299 CAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
259 CAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* * * *
2360 ATTTCGTCGAATTTGGAAAAAAATTGACACGATATTATTTTCATCAATTTTTCGCCACAATACTC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
* *
2425 ATAAAAAGTGTATAATTCAACACCAAAGAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTT
66 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTT
* * *
2490 CCTATTTTTGCTGAATTAATCGAAACATGATTCAAATGCTCCTACAAATAAATCCTTAAATCCAG
131 CCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCAG
* * * *
2555 TGTGGCTGAGATTTTATTAGATTAATATATATATTTCAATGAATCTTGACGCCAAAAATCATGTA
196 TGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCA
* *
2620 AAACTGAGTCGGGGCCTCGGAACGTGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
261 AAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* *
2679 ATTTCGTCGAATTTTGAAAAAAATTGACATGAAATTATTTTCCTCAATTTTTGGTCACAATACTC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
* * *
2744 ATTAAAAATGTATAATTCAACACCAAAGAGATTGAAGGGTTTTTCACGCTTCTAATAACGTTTTT
66 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTT
* *
2809 CCTATTTTTGCCGAATTAATCG-AACATGATTCATATGCTCCTAAAAATAAATCCTTAAATCTAG
131 CCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCAG
* * * * * *
2873 TGTCGCTGAGATTTTTTTAGATTAATATTGATATTTCAATGAGCCTTTACTCCAAAAATCATGCA
196 TGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCA
** *
2938 AAACTGAGTCGGGGCCTTGGATCGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
261 AAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* * * *
2997 ATTTCGTTGAATTTTGAAAAAAATTGACACGAAATTTTTTTCGTCAATTTTTCGCCACAATACTC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
*
3062 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGTG-TATTTCACGCTTCTAATAACGTTTT
66 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCT-TTTCACGCTTCTAATAACGTTTT
* * *
3126 CCCTATTTTTGCCGAATTAATCGAAACATAATTCAGATGCTCCTAAAAATAAATCCTTAAATCTA
130 TCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
3191 GTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGC
195 GTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGC
* * *
3256 AAAACTGTGTCAGGGCCCCGGAACGCGTTTGTAGCCAAAAATCGTGATGGTTAGTACACG
260 AAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
* *
3316 ATATAGTCGAAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACT
1 ATTTCGTCG-AATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACT
*
3381 CATAAAAAATGTATAATTCAACACCAAAGAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
65 CATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
3446 TCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
130 TCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
* *
3511 GTGTGGCAGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTTTTGACGCCAAAAATCATGC
195 GTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGC
* * *
3576 AAAACTGAGTCTGGGCCCCGGAATGCGACTTTTAGCCAAAAATCGTGATGGTTAGTACACG
260 AAAACTGAGTCGGGGCCCCGGAACGCG-TTTTTAGCCAAAAATCGTGATGGTTAGTACACG
*
3637 ATTTCGTTGAATTTTGAAAAAAATTGACAC-AAATTTATTTTCCTCAATTTTTGGCCACAATACT
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAA-TTATTTTCCTCAATTTTTGGCCACAATACT
* * *
3701 CTTAAAAAATGTATAATTAAACACCAAAAAAATTGAAGGGCTTTTCACGC-TCTAATAACGTTTT
65 CATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
* * * *
3765 TCCTATTTTTGTCGAATTAATCGAATA-ATGATTCAGGTGCTCCTAAAAATAAATCTTTAAATCT
130 TCCTATTTTTGCCGAATTAATCGAA-ACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCC
* *
3829 AGTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTTAATGAGTCTTGACGCTAAAAATCATG
194 AGTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
* * **
3894 CAAAATTGAAG-CGGGGCCCCGGATCGCGTTTTTAGCCAAAAA-CTGTGATGGTTAGTACATA
259 CAAAACTG-AGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATC-GTGATGGTTAGTACACG
* * * * * *
3955 ATTTCGCCGAATTTTG--CAAAACTGGCATGAAAAATTTTTTTCCTCAATTTTTGGCCACAATAC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACG--AAATTATTTTCCTCAATTTTTGGCCACAATAC
* *
4018 TCATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAAAATGTTT
64 TCATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTT
* *
4083 TTCCTATTTTTTCGGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCC
129 TTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCC
* * * * *
4148 AGTGTGACTGAGATTTTGTTAGATTAATATAGATATTTCTATGAGTCTTGATGGCAAAACTCATG
194 AGTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
* * *
4213 CAAAACTGAGTCGGGGCCCCAGAACGCGTTTTTA-TCAAAGAA-CTGTGATGGTTAGTACAAG
259 CAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAA-AATC-GTGATGGTTAGTACACG
* * * * * * * *
4274 ATTTCGCCCAATTCTG-CAAAAACTGGCACGAAATTTTTTTCCCTCAATTTTTGGCCACAAAACT
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTT-CCTCAATTTTTGGCCACAATACT
* * * * ** * *
4338 AATAAAAAATGTTTAATTCAACACCATAAATATTGAAGGTTTTTTCATGCTTCTAATAATGTTTT
65 CATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTT
* * * * *
4403 TCATATTTTTTTCCAAATTAATCGAAACATGATTCAGAAGCTCCTAAAAATAAATCCTTTAATCC
130 TCCTA-TTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCC
* * *
4468 AGTGTGGCTGACATTTTGTCAGATTAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
194 AGTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
* * * * * *
4533 CAAAACTGACT-GGGGTCCCAGAACGCGTTTTTAGCCAAAAAAAACGTGATGCTTAGTACAAG
259 CAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCC--AAAAATCGTGATGGTTAGTACACG
* * * * **
4595 ATTTCGTCGAATTATG--CAAAATCTAACACGAAAATT-TATTCCTCAATTTTTTACCACAATAC
1 ATTTCGTCGAATTTTGAAAAAAAT-TGACACG-AAATTATTTTCCTCAATTTTTGGCCACAATAC
* ** * * * *
4657 TCATAAGAAA--TATAATTCAGTACCAAAAAGATTGAAAGGTTTTTCGCGCTTCTAATAACATTT
64 TCATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTT
* * * * *
4720 TTCCTATTTTTCCCGAATTAATTGAAACATGATTCAAATGCTCCTAAAAATAAATCTTTAAATCT
129 TTCCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCC
** * * * ***
4785 TTTATGGATGAGATTTTGTTAGATTAATTTAGATATTTCAATGAGTCTTGGTACC-AAAATCATG
194 AGTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATG
* * * * *
4849 CAAAACTGAGAC-CGGCCCCAGAACGCGTTTTTAGCCAAAAA-CTGTGATGATTCGTACACG
259 CAAAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATC-GTGATGGTTAGTACACG
** * * * *
4909 ATTTCACCGAATTTTGCAAAAACTT-ACCCG-AA-T-GTTTCCTCAATTTTTGGCCACAATACTC
1 ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
* * * * *
4970 ATAAAAAATATATAATTTAGCACCAAAAAGATTGATGGGTTTTTCACGCTTCTAATAACGTTTTT
66 ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTT
* * * * *
5035 CCTAGTTTTT-CTGAATTAATCGAAACATGATTTAGATGCTACAAAAAATAAATTCTTAAATCCA
131 CCTA-TTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCA
* * * *
5099 GTATGGGTGAGATTTTGTAAGATTAATATAGATTTTTCAATGAGTCTTG
195 GTGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTG
5148 GCCATAATAC
Statistics
Matches: 2799, Mismatches: 271, Indels: 80
0.89 0.09 0.03
Matches are distributed among these distances:
311 32 0.01
312 2 0.00
313 142 0.05
314 41 0.01
315 1 0.00
316 61 0.02
317 156 0.06
318 549 0.20
319 907 0.32
320 820 0.29
321 79 0.03
322 9 0.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (319 bp):
ATTTCGTCGAATTTTGAAAAAAATTGACACGAAATTATTTTCCTCAATTTTTGGCCACAATACTC
ATAAAAAATGTATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAACGTTTTT
CCTATTTTTGCCGAATTAATCGAAACATGATTCAGATGCTCCTAAAAATAAATCCTTAAATCCAG
TGTGGCTGAGATTTTGTTAGATTAATATAGATATTTCAATGAGTCTTGACGCCAAAAATCATGCA
AAACTGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACG
Found at i:12678 original size:2 final size:2
Alignment explanation
Indices: 12671--12702 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
12661 ACATGATGAC
12671 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12703 TGACATTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19788 original size:12 final size:13
Alignment explanation
Indices: 19745--19794 Score: 57
Period size: 12 Copynumber: 3.6 Consensus size: 13
19735 CAAGTGAGTA
19745 TTTCTCTCTTCTTC
1 TTTCTCT-TTCTTC
19759 TTCTTCTTCTTTCTTC
1 -T-TTC-TCTTTCTTC
19775 TTTCTCTTTC-TC
1 TTTCTCTTTCTTC
19787 TTTCTCTT
1 TTTCTCTT
19795 CATTTTGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
12 10 0.30
13 6 0.18
14 3 0.09
15 2 0.06
16 9 0.27
17 3 0.09
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTCTCTTTCTTC
Found at i:19789 original size:19 final size:17
Alignment explanation
Indices: 19745--19800 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
19735 CAAGTGAGTA
19745 TTTCTCTCTTCTTCTTCT
1 TTTCTCT-TTCTTCTTCT
*
19763 TCT-TCTTTCTTCTTTCT
1 TTTCTCTTTCTTC-TTCT
19780 CTTTCTCTTTC-TCTTCAT
1 -TTTCTCTTTCTTCTTC-T
19798 TTT
1 TTT
19801 GGTTCCTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 6 0.19
17 13 0.41
18 7 0.22
19 6 0.19
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTCTCTTTCTTCTTCT
Found at i:34592 original size:29 final size:30
Alignment explanation
Indices: 34534--34611 Score: 95
Period size: 29 Copynumber: 2.6 Consensus size: 30
34524 AACCATGACT
34534 AAACTTAAATAATAATATTTGGCCAACAAAAA
1 AAACTTAAATAATAATATTT-G-CAACAAAAA
* *
34566 AAACTTAAATAATAATATTT-TACCAAAAA
1 AAACTTAAATAATAATATTTGCAACAAAAA
* *
34595 AGACTTGAATAATAATA
1 AAACTTAAATAATAATA
34612 CAATTTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 22 0.52
32 20 0.48
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.28
Consensus pattern (30 bp):
AAACTTAAATAATAATATTTGCAACAAAAA
Found at i:35121 original size:18 final size:18
Alignment explanation
Indices: 35088--35122 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
35078 TGATGAGGAT
*
35088 GACGATGACGACGAAGAC
1 GACGATGACAACGAAGAC
*
35106 GACGATGACAAGGAAGA
1 GACGATGACAACGAAGA
35123 TGGTTCCCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.17, G:0.34, T:0.06
Consensus pattern (18 bp):
GACGATGACAACGAAGAC
Found at i:48504 original size:14 final size:15
Alignment explanation
Indices: 48485--48513 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48475 TTCTTTCTAA
48485 TTTCTTTTT-TTTTT
1 TTTCTTTTTCTTTTT
48499 TTTCTTTTTCTTTTT
1 TTTCTTTTTCTTTTT
48514 CAACTTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTCTTTTTCTTTTT
Found at i:56441 original size:24 final size:24
Alignment explanation
Indices: 56414--56473 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
56404 CTTCCGCCGG
*
56414 CTTCTCCTCTGCTTTCTCTTCCTT
1 CTTCTCCTCTGCTTTCTCCTCCTT
*
56438 CTTCTCCTCTGCTTTCTCCTCTTT
1 CTTCTCCTCTGCTTTCTCCTCCTT
56462 CTTCTCCTCTGC
1 CTTCTCCTCTGC
56474 CGGAGGTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.00, C:0.43, G:0.05, T:0.52
Consensus pattern (24 bp):
CTTCTCCTCTGCTTTCTCCTCCTT
Found at i:56454 original size:12 final size:12
Alignment explanation
Indices: 56415--56473 Score: 59
Period size: 12 Copynumber: 4.9 Consensus size: 12
56405 TTCCGCCGGC
56415 TTCTCCTCTGCT
1 TTCTCCTCTGCT
* *
56427 TTCTCTTCCTTC-
1 TTCTCCT-CTGCT
56439 TTCTCCTCTGCT
1 TTCTCCTCTGCT
*
56451 TTCTCCTCT-TT
1 TTCTCCTCTGCT
56462 CTTCTCCTCTGC
1 -TTCTCCTCTGC
56474 CGGAGGTTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
11 4 0.11
12 30 0.81
13 3 0.08
ACGTcount: A:0.00, C:0.42, G:0.05, T:0.53
Consensus pattern (12 bp):
TTCTCCTCTGCT
Found at i:62256 original size:31 final size:30
Alignment explanation
Indices: 62174--62317 Score: 161
Period size: 29 Copynumber: 4.8 Consensus size: 30
62164 AAATGGCTTC
* * *
62174 AAATTGCAAGTTCAAGGGGCAAAATGTCCA
1 AAATTACAAGTTCAGGGGGCAAAACGTCCA
* *
62204 AAATTA-AAGTTTAGGGAGCAAAACGT-CA
1 AAATTACAAGTTCAGGGGGCAAAACGTCCA
*
62232 AAATCATACAAGTTCAGGGGGCAAAATGTCCA
1 AAAT--TACAAGTTCAGGGGGCAAAACGTCCA
*
62264 AAATTA-AAGTTTAGGGGGCAAAACGT-CA
1 AAATTACAAGTTCAGGGGGCAAAACGTCCA
62292 AAATCATACAAGTTCAGGGGGCAAAA
1 AAAT--TACAAGTTCAGGGGGCAAAA
62318 AAGGCATTAA
Statistics
Matches: 96, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
28 12 0.12
29 34 0.35
30 11 0.11
31 33 0.34
32 6 0.06
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (30 bp):
AAATTACAAGTTCAGGGGGCAAAACGTCCA
Found at i:62273 original size:60 final size:60
Alignment explanation
Indices: 62180--62317 Score: 258
Period size: 60 Copynumber: 2.3 Consensus size: 60
62170 CTTCAAATTG
*
62180 CAAGTTCAAGGGGCAAAATGTCCAAAATTAAAGTTTAGGGAGCAAAACGTCAAAATCATA
1 CAAGTTCAGGGGGCAAAATGTCCAAAATTAAAGTTTAGGGAGCAAAACGTCAAAATCATA
*
62240 CAAGTTCAGGGGGCAAAATGTCCAAAATTAAAGTTTAGGGGGCAAAACGTCAAAATCATA
1 CAAGTTCAGGGGGCAAAATGTCCAAAATTAAAGTTTAGGGAGCAAAACGTCAAAATCATA
62300 CAAGTTCAGGGGGCAAAA
1 CAAGTTCAGGGGGCAAAA
62318 AAGGCATTAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 76 1.00
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (60 bp):
CAAGTTCAGGGGGCAAAATGTCCAAAATTAAAGTTTAGGGAGCAAAACGTCAAAATCATA
Found at i:67367 original size:29 final size:29
Alignment explanation
Indices: 67325--67399 Score: 150
Period size: 29 Copynumber: 2.6 Consensus size: 29
67315 TTTGCAATAG
67325 AACTTCCGAGCTCTGTATTCTCAAAAAAA
1 AACTTCCGAGCTCTGTATTCTCAAAAAAA
67354 AACTTCCGAGCTCTGTATTCTCAAAAAAA
1 AACTTCCGAGCTCTGTATTCTCAAAAAAA
67383 AACTTCCGAGCTCTGTA
1 AACTTCCGAGCTCTGTA
67400 ACTCATTTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (29 bp):
AACTTCCGAGCTCTGTATTCTCAAAAAAA
Found at i:73503 original size:16 final size:16
Alignment explanation
Indices: 73482--73515 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73472 TATCTGTTAA
*
73482 ATTTCATGTTGGTCAG
1 ATTTCATGTTGATCAG
73498 ATTTCATGTTGATCAG
1 ATTTCATGTTGATCAG
73514 AT
1 AT
73516 GGCCGGCACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.44
Consensus pattern (16 bp):
ATTTCATGTTGATCAG
Found at i:85656 original size:3 final size:3
Alignment explanation
Indices: 85644--85683 Score: 53
Period size: 3 Copynumber: 13.3 Consensus size: 3
85634 AGCAGCCATG
* * *
85644 GAA GAT GAA GAA GAA GAA GAA GAA GAA GAA AAA GAC GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
85684 TTCTGTGAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.62, C:0.03, G:0.33, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:95761 original size:15 final size:15
Alignment explanation
Indices: 95741--95769 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
95731 AGATTCTACC
95741 AGTCTCCAAAATATA
1 AGTCTCCAAAATATA
95756 AGTCTCCAAAATAT
1 AGTCTCCAAAATAT
95770 TCCCAAGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (15 bp):
AGTCTCCAAAATATA
Found at i:98137 original size:22 final size:22
Alignment explanation
Indices: 98112--98158 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
98102 TGGTCCCTTT
98112 ATATTTTTAAGTTATCGTTTAG
1 ATATTTTTAAGTTATCGTTTAG
98134 ATATTTTTAAGTTATCGTTTAG
1 ATATTTTTAAGTTATCGTTTAG
98156 ATA
1 ATA
98159 GACTGATCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.53
Consensus pattern (22 bp):
ATATTTTTAAGTTATCGTTTAG
Found at i:105273 original size:334 final size:333
Alignment explanation
Indices: 104490--106623 Score: 3008
Period size: 334 Copynumber: 6.4 Consensus size: 333
104480 TCTTTTGGCT
* *
104490 AAAAACGTGTACTAACCATTACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCTG-CTCTA-TT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCC-GACTC-AGTT
* *
104553 TTGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCCTCTAATAAAAACTTAG-TCA
64 TTGCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCT-A
** * *
104617 CATTGCATTTAAGGATTTGTTTTCCCGAGCATTTGAATCTTCTTTCGATTTAATTAGAAATTAAT
128 CATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAAT
* * * * * * **
104682 TTAAGAAAAATATGAAAAA-AATATTAAAAACGTGGAAAGTCCTTCAATCTTTTTGGCGTTACGT
193 TCAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTAAAT
* * * *
104746 TCTATATATTTTAGGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCA
258 TGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCA
104811 AAATTTTAGCC
323 AAATTTTAGCC
* * * * * ** *
104822 AAAATCGTGTAC---GCGTCACGGTTTTTGGCTGAAAACGGGTTTTGGGGTCTTG--GCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
* * *
104882 GCATATGATTTTTGGCGCCAGGATTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCTAC
66 GC--ATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCTAC
* ** *
104947 ATCGCATTTAAGGATTTGTTTTCCCGAGCATTTGAATCTTGTTTCGATTTCATTA-AAACTAATT
129 ATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATT
*
105011 CAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATATGTTTTGGCGTTAAAT
194 CAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCT-TTTTGGCGTTAAAT
*
105076 CGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTTGC
258 TGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCA-TTTTTTGC
105141 AAAATTTTAGCC
322 AAAATTTTAGCC
* *
105153 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTTGGGGTCCCGCCTCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
* * *
105218 GCATGATTTTTGGCGTCAAGACTCCATGAAATAACTATATTCATCTAATAAAAACTTAGCCACAT
66 GCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCTACAT
* *
105283 TGCATTTAATGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAAAAATTAATTCA
131 TGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCA
* * *
105348 GGAAAAATATGAAAAACAAT-TTCAAAAGCGTGAAAAATCCTCCAATCTTTTTGGTGTTAAATTG
196 GGAAAAATATGAAAAACGATATT-AAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTAAATTG
* * * *
105412 TATATATTTCATTAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
260 TATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCAAA
105477 ATTTTAGCC
325 ATTTTAGCC
* * *
105486 AAAATC--G---------TCACGGTTTTTGGCTAAAAATGTGTTTCGGGGTCCCGACTCAATTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
*
105540 GCATGATTTTTGGCGTCAATACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAG-TCACA
66 GCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCT-ACA
105604 TTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATT-GAAAATTAATT
130 TTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAG-AAATTAATT
*
105668 CAGGAAAAATATGAAACACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGCGTTAAAT
194 CAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCT-TTTTGGCGTTAAAT
* * *
105733 TGTATAAATTTTATGAGTATGTTATCCAAAAATTGAGGAAAAACTTTTAGCGGTCATTTTTTGCA
258 TGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCA
105798 AAATTTTAGCC
323 AAATTTTAGCC
105809 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
* * * *
105874 GCATGATTTTTGGCATCAGGACTCCTTGAAATATCTGTATTCTTCTAATAAAAACTTAG-TCACA
66 GCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCT-ACA
* *
105938 TGGCATTTAAGGATTTGTTTTTACTAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTC
130 TTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTC
* * *
106003 AGG-AAAATATGAAAAACGATATTAAAAGCGTGAAAATTCCTCCAATCTTTTTGGCGTTACATTT
195 AGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTAAATTG
* * * * * *
106067 TATGTATATCATGAGTATTTCATCCAAATATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
260 TATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCAAA
106132 ATTTTAGCC
325 ATTTTAGCC
* * *
106141 AAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTACGGAGTCCCGACTCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
* ** * *
106206 GCATTAATTTTT-ATGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCCACA
66 GCA-TGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCTACA
** * *
106270 TTGCATTTAAAAATTTGTTTTTACGAACATTTGAATCTTGTTTCGATTTCATTAGAAATCAATTC
130 TTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTC
* * * **
106335 AGGAAAAATATGAAAAACGATATTAAAATCGTGAAAAGTCCTCCATTCTTTTTTGGCATTACGTT
195 AGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATC-TTTTTGGCGTTAAATT
* * *
106400 GTATATATTTTATGAGTATTTTATCCAGAAATTGAAGAAAAACTTATCGCGGTCATTTTTTGCAA
259 GTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCAA
106465 AATTTTAGCC
324 AATTTTAGCC
** * * *
106475 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCTCGGTCTCGGCTTAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
* *
106540 GAATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGCCTGCT
66 GCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTA----GCT
106605 ACATTGCATTTAAGGATTT
127 ACATTGCATTTAAGGATTT
106624 TTT
Statistics
Matches: 1610, Mismatches: 153, Indels: 72
0.88 0.08 0.04
Matches are distributed among these distances:
322 206 0.13
323 90 0.06
325 1 0.00
326 1 0.00
327 7 0.00
328 25 0.02
329 165 0.10
330 64 0.04
331 33 0.02
332 260 0.16
333 124 0.08
334 553 0.34
335 53 0.03
336 9 0.01
338 19 0.01
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (333 bp):
AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
GCATGATTTTTGGCGTCAAGACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCTACAT
TGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCA
GGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTAAATTGT
ATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCAAAA
TTTTAGCC
Found at i:106371 original size:666 final size:661
Alignment explanation
Indices: 104490--106623 Score: 3139
Period size: 666 Copynumber: 3.2 Consensus size: 661
104480 TCTTTTGGCT
* *
104490 AAAAACGTGTACTAACCATTACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCTGCTCTA-TTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCC-GCTC-AGTTT
* * *
104554 TGCATGATTTTTGGCGTCAGGACTCCTTGAAATATCTATATTCCTCTAATAAAAACTTAGTCACA
64 TGCATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGTCACA
** * *
104619 TTGCATTTAAGGATTTGTTTTCCCGAGCATTTGAATCTTCTTTCGATTTAATTAGAAATTAATTT
129 TTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAA-TT
* * * * * * *
104684 AAGAAAAATATGAAAAA-AATATTAAAAACGTGGAAAGTCCTTCAATCTTTTTGGCGTTACGTTC
193 CAGGAAAATATGAAAAACAATATTAAAAGCGTGAAAAATCCTCCAATCTTTTTGGCGTTACATTC
* *
104748 TATATATTTTAGGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
258 TATATATTTCATGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
* * * ** *
104813 ATTTTAGCCAAAATCGTGTACGCGTCACGGTTTTTGGCTGAAAACGGGTTTTGGGGTCTTG--GC
323 ATTTTAGCCAAAATCGTGTAC-C-TCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTC
* ** *
104876 AGTTTTGCATATGATTTTTGGCGCCAGGATTCCTTGAAATATCTATATTCATCTAATAAAAACTT
386 AGTTTTGCAT-TGATTTTTGGCGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTT
* * **
104941 AGCTACATCGCATTTAAGGATTTGTTTTCCCGAGCATTTGAATCTTGTTTCGATTTCATTA-AAA
450 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAA
*
105005 -CTAATTCAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATATGTTTTGGC
515 TC-AATTCAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGC
*
105069 GTTAAATCGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATT
579 GTTAAATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCA-T
105134 TTTTTGCAAAATTTTAGCC
643 TTTTTGCAAAATTTTAGCC
*
105153 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTTGGGGTCCCGCCTCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCG-CTCAGTTTT
* *
105218 GCATGATTTTTGGCGTCAAGACTCCATGAAATAACTATATTCATCTAATAAAAACTTAGCCACAT
65 GCATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGTCACAT
* *
105283 TGCATTTAATGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAAAAATTAATTCA
130 TGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCA
* * *
105348 GGAAAAATATGAAAAACAAT-TTCAAAAGCGTGAAAAATCCTCCAATCTTTTTGGTGTTAAATTG
195 GG-AAAATATGAAAAACAATATT-AAAAGCGTGAAAAATCCTCCAATCTTTTTGGCGTTACATTC
*
105412 TATATATTTCATTAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
258 TATATATTTCATGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAA
* * *
105477 ATTTTAGCCAAAATC--G----TCACGGTTTTTGGCTAAAAATGTGTTTCGGGGTCCCGACTCAA
323 ATTTTAGCCAAAATCGTGTACCTCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAG
* *
105536 TTTTGCA-TGATTTTTGGCGTCAATACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGT
388 TTTTGCATTGATTTTTGGCGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGC
*
105600 CACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATT-GAAAATT
453 CACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAG-AAATC
*
105664 AATTCAGGAAAAATATGAAACACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGCGTT
517 AATTCAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGCGTT
* * *
105729 AAATTGTATAAATTTTATGAGTATGTTATCCAAAAATTGAGGAAAAACTTTTAGCGGTCATTTTT
582 AAATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTT
105794 TGCAAAATTTTAGCC
647 TGCAAAATTTTAGCC
105809 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCG-CTCAGTTTT
* * * * *
105874 GCATGATTTTTGGCATCAGGACTCCTTGAAATATCTGTATTCTTCTAATAAAAACTTAGTCACAT
65 GCATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGTCACAT
* *
105939 GGCATTTAAGGATTTGTTTTTACTAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCA
130 TGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCA
* * *
106004 GGAAAATATGAAAAACGATATTAAAAGCGTGAAAATTCCTCCAATCTTTTTGGCGTTACATTTTA
195 GGAAAATATGAAAAACAATATTAAAAGCGTGAAAAATCCTCCAATCTTTTTGGCGTTACATTCTA
* * * * *
106069 TGTATATCATGAGTATTTCATCCAAATATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAAT
260 TATATTTCATGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAAT
* *
106134 TTTAGCCAAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTACGGAGTCCCGACT
325 TTTAGCCAAAATCGTGTAC----C-TCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACT
* **
106199 CAGTTTTGCATTAATTTTT-ATGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTT
385 CAGTTTTGCATTGATTTTTGGCGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTT
** *
106263 AGCCACATTGCATTTAAAAATTTGTTTTTACGAACATTTGAATCTTGTTTCGATTTCATTAGAAA
450 AGCCACATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAA
* * * *
106328 TCAATTCAGGAAAAATATGAAAAACGATATTAAAATCGTGAAAAGTCCTCCATTCTTTTTTGGCA
515 TCAATTCAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGCG
** * * *
106393 TTACGTTGTATATATTTTATGAGTATTTTATCCAGAAATTGAAGAAAAACTTATCGCGGTCATTT
580 TTAAATTGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTT
106458 TTTGCAAAATTTTAGCC
645 TTTGCAAAATTTTAGCC
** * *
106475 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCTCGGTCTCGGCTTAGTTTT
1 AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTC-CCGCTCAGTTTT
*
106540 GAATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGCCTGCT
65 GCATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAG--T-C-
106605 ACATTGCATTTAAGGATTT
126 ACATTGCATTTAAGGATTT
106624 TTT
Statistics
Matches: 1329, Mismatches: 113, Indels: 51
0.89 0.08 0.03
Matches are distributed among these distances:
655 127 0.10
656 342 0.26
657 123 0.09
658 9 0.01
662 7 0.01
663 188 0.14
664 113 0.09
666 390 0.29
667 10 0.01
668 1 0.00
669 1 0.00
670 18 0.01
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (661 bp):
AAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGCTCAGTTTTG
CATGATTTTTGGCGTCAAGACTCCATGAAATATCTATATTCATCTAATAAAAACTTAGTCACATT
GCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATTAATTCAG
GAAAATATGAAAAACAATATTAAAAGCGTGAAAAATCCTCCAATCTTTTTGGCGTTACATTCTAT
ATATTTCATGAGTATTTTATTCAAAAATTGAGGAAAAATTTTTCGCGGTCATTTTTTGCAAAATT
TTAGCCAAAATCGTGTACCTCACGGTTTTTGGCTAAAAACGCGTTTCGGGGTCCCGACTCAGTTT
TGCATTGATTTTTGGCGTCAACACTCCTTGAAATATCTATATTCATCTAATAAAAACTTAGCCAC
ATTGCATTTAAGGATTTGTTTTTACGAGCATTTGAATCTTGTTTCGATTTCATTAGAAATCAATT
CAGGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTGTTTTGGCGTTAAAT
TGTATATATTTTATGAGTATTTTATCCAAAAATTGAGGAAAAACTTTTCGCGGTCATTTTTTGCA
AAATTTTAGCC
Done.