Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015419.1 Corchorus olitorius cultivar O-4 contig15452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61479

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3226--3330
55
1.9
56
84
5
142
27
9
21
40
1.84
4256--4361
39
2.7
39
92
4
171
31
16
16
35
1.91
4925--4957
14
2.4
14
100
0
66
72
0
0
27
0.85
4922--4954
17
1.9
17
93
0
57
75
0
0
24
0.80
16287--16320
16
2.1
16
100
0
68
44
0
17
38
1.49
18696--18737
20
2.1
20
100
0
84
61
9
9
19
1.53
21971--22002
2
16.0
2
100
0
64
50
0
0
50
1.00
31130--31224
50
1.9
50
93
0
163
42
24
13
20
1.88
33305--33463
60
2.7
61
89
5
236
37
16
18
27
1.92
33508--33672
31
5.5
30
70
8
129
30
21
15
32
1.94
33504--33677
60
2.9
60
91
0
260
31
20
15
32
1.94
33537--33638
29
3.4
29
70
5
87
33
21
14
30
1.93
35860--35974
57
2.0
57
94
0
203
39
12
16
32
1.86
50891--51021
60
2.2
60
97
0
244
41
24
24
9
1.83
54327--54375
17
2.9
16
85
8
62
34
22
20
22
1.97

Tables:   1

The End!