Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015425.1 Corchorus olitorius cultivar O-4 contig15458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59216

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4314--4338
2
12.5
2
100
0
50
0
0
48
52
1.00
18603--18629
2
13.5
2
100
0
54
48
0
0
51
1.00
32383--32408
2
13.0
2
100
0
52
50
0
0
50
1.00
36012--36036
10
2.5
10
100
0
50
92
0
8
0
0.40
42072--42180
57
1.9
57
84
3
148
33
22
23
21
1.98
46233--46334
51
2.0
51
100
0
204
27
3
25
43
1.72
54362--54405
9
4.9
9
83
8
54
2
0
9
88
0.59
54359--54416
30
1.9
30
89
0
89
5
3
6
84
0.86
55947--55975
14
2.1
14
100
0
58
34
0
6
58
1.25
55985--58974
332
9.0
333
89
3
4486
33
15
17
33
1.91

Tables:   1

The End!