Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015426.1 Corchorus olitorius cultivar O-4 contig15459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63047

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26--1951
333
5.8
333
91
1
3106
32
15
17
33
1.92
1963--4118
333
6.5
333
88
2
2610
32
14
18
34
1.91
1963--4118
665
3.3
662
85
3
2633
32
14
18
34
1.91
4142--5871
333
5.2
333
84
3
2274
32
14
17
34
1.91
6006--6120
58
2.0
57
98
1
221
58
3
8
29
1.45
6997--7028
14
2.3
14
100
0
64
37
12
21
28
1.90
7722--8176
62
7.3
62
95
0
838
34
23
38
3
1.73
8143--8259
34
3.2
34
80
17
153
47
17
31
2
1.61
8192--8262
22
3.3
22
70
21
78
49
18
30
1
1.56
8174--8294
42
2.9
42
96
0
224
49
17
30
2
1.60
8449--8506
2
30.0
2
81
6
66
41
1
56
0
1.09
8449--8506
14
4.3
14
84
8
84
41
1
56
0
1.09
21517--21613
51
1.9
51
97
0
185
30
10
13
45
1.77
26262--26301
2
21.0
2
80
19
50
52
0
2
45
1.14
26262--26303
22
1.9
22
90
9
68
52
0
2
45
1.13
28699--28740
21
2.0
21
95
0
75
23
35
11
28
1.91
31696--31723
3
9.3
3
100
0
56
0
32
0
67
0.91
43940--43975
6
6.0
6
93
0
54
5
50
16
27
1.68
59030--59059
7
4.1
7
91
8
51
40
16
0
43
1.48

Tables:   1

The End!