Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015430.1 Corchorus olitorius cultivar O-4 contig15463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89453

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2309--2360
21
2.5
21
75
6
52
48
9
9
32
1.69
2566--2608
22
1.9
23
85
4
61
46
6
16
30
1.73
2640--3442
199
4.0
199
88
1
1209
33
13
18
33
1.90
2640--3442
397
2.0
398
90
1
1281
33
13
18
33
1.90
3994--4026
2
16.5
2
100
0
66
48
0
0
51
1.00
5788--5834
23
2.0
23
100
0
94
42
4
12
40
1.63
12968--13000
2
16.5
2
93
0
57
48
3
0
48
1.17
31930--32044
29
4.4
27
81
12
100
26
27
0
46
1.53
31955--32004
15
3.4
15
70
25
52
26
28
0
46
1.53
31947--32019
29
2.5
29
97
0
137
23
26
0
50
1.49
32501--32579
25
3.0
25
79
7
68
29
16
16
37
1.91
32586--32646
12
4.8
12
75
15
59
27
14
9
47
1.76
32581--32634
28
1.9
28
96
0
99
31
12
12
42
1.81
32635--32754
60
2.0
60
98
0
231
18
20
21
39
1.93
32819--32956
27
4.9
27
80
11
159
37
21
11
28
1.89
32847--32964
61
1.9
61
94
0
209
35
20
16
27
1.94
45468--45525
19
2.9
19
87
5
80
36
12
22
29
1.90
46868--46928
30
2.0
30
84
9
79
68
3
16
11
1.32
47972--48338
183
2.0
184
95
1
657
30
17
15
36
1.91
56239--56389
72
2.1
72
98
0
293
29
13
24
31
1.94
72805--72863
27
2.2
27
100
0
118
22
18
3
55
1.57
84222--84298
36
2.1
36
97
0
145
23
22
22
32
1.98

Tables:   1

The End!