genome.fa.s15433.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015433.1 Corchorus olitorius cultivar O-4 contig15466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118896

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451--485	2	17.5	2	100	0	70	48	0	0	51	1.00
3615--3675	31	2.0	31	100	0	122	29	18	19	32	1.95
3934--4038	31	3.4	31	89	1	158	29	20	25	24	1.99
7201--7329	60	2.2	60	85	2	170	39	17	13	30	1.87
19593--19702	36	3.1	36	89	0	166	21	14	24	39	1.91
22650--28664	333	18.1	331	83	4	7179	36	16	16	30	1.91
28168--29178	511	2.0	498	92	3	1668	36	17	18	27	1.93
28672--30749	331	6.3	327	79	7	2055	37	16	15	30	1.90
28672--30749	662	3.1	654	79	7	2463	37	16	15	30	1.90
31085--31160	29	2.6	30	89	6	104	43	14	5	36	1.68
31097--31160	29	2.2	29	94	2	110	42	12	6	39	1.68
32343--32413	20	3.5	20	72	0	70	30	26	7	35	1.83
32339--32659	32	9.2	41	86	11	196	33	26	8	32	1.86
32396--32659	32	8.0	32	90	6	420	34	26	8	31	1.87
32601--32659	20	2.9	20	71	2	55	32	28	6	32	1.83
35479--36612	565	2.0	565	97	0	2135	40	23	14	22	1.90
43378--43454	38	2.0	38	100	0	154	23	12	23	40	1.89
46173--46210	17	2.2	17	100	0	76	55	13	7	23	1.64
48581--48719	66	2.1	66	93	1	235	26	27	14	31	1.95
56432--56467	1	36.0	1	100	0	72	0	0	0	100	0.00
71604--71636	2	16.5	2	100	0	66	51	0	0	48	1.00
84639--84808	42	4.0	42	98	0	331	34	32	1	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84719--84789	24	3.2	24	63	29	66	32	35	2	29	1.72
87893--88001	54	2.0	54	100	0	218	25	32	12	29	1.93
95349--95407	19	3.0	19	80	9	73	33	18	10	37	1.85
96497--96536	2	20.0	2	89	0	53	47	5	2	45	1.38
97538--97578	2	20.5	2	100	0	82	51	0	0	48	1.00
102196--102221	4	6.5	4	100	0	52	50	0	0	50	1.00
110051--110083	13	2.3	15	90	10	52	48	0	6	45	1.27

Tables:   1

The End!