Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015434.1 Corchorus olitorius cultivar O-4 contig15467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  173684

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
436--486
2
25.5
2
79
0
57
0
56
1
41
1.10
641--703
10
6.1
10
70
26
51
1
34
12
50
1.50
655--765
20
5.3
20
67
16
64
2
28
17
51
1.59
643--802
42
3.8
42
88
3
250
2
30
17
50
1.59
643--802
84
1.9
84
94
0
284
2
30
17
50
1.59
769--1265
62
8.3
62
87
8
746
3
37
23
35
1.73
661--849
84
2.2
83
82
9
206
2
31
20
46
1.64
777--1253
114
4.1
114
90
5
765
3
37
24
34
1.74
768--1253
176
2.8
173
85
9
707
3
37
24
34
1.74
3085--3164
40
2.0
40
100
0
160
45
20
0
35
1.51
3384--6231
332
8.6
333
89
2
4096
32
15
17
35
1.91
3384--6231
667
4.3
663
88
3
4067
32
15
17
35
1.91
3515--6229
990
2.7
984
91
2
4167
32
15
16
35
1.90
7415--7740
52
6.3
52
95
2
577
25
20
17
36
1.94
7930--8347
224
1.9
217
92
3
694
34
19
14
31
1.91
15119--15162
22
2.0
22
86
8
63
40
9
0
50
1.34
15119--15170
28
2.0
25
85
11
68
44
7
0
48
1.31
15129--15170
22
1.9
22
85
0
57
45
9
0
45
1.36
16994--17023
14
2.2
13
94
5
51
50
0
0
50
1.00
21276--21366
44
2.1
44
100
0
182
48
2
15
34
1.57
22061--22097
2
18.5
2
100
0
74
51
0
0
48
1.00
27008--27081
30
2.5
30
78
8
73
31
21
14
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27343--27406
29
2.2
30
83
8
78
31
9
23
35
1.87
30847--30992
75
1.9
76
95
1
267
29
15
4
50
1.64
34144--34198
19
2.9
19
86
0
74
34
10
20
34
1.87
35237--35264
6
4.7
6
100
0
56
50
0
0
50
1.00
36632--36657
2
13.0
2
100
0
52
50
0
0
50
1.00
37985--38067
42
2.0
42
100
0
166
40
26
12
20
1.87
43350--43399
26
1.9
26
91
0
82
32
0
20
48
1.50
48260--48285
2
13.0
2
100
0
52
0
0
50
50
1.00
61361--61435
35
2.1
35
95
0
132
30
9
24
36
1.87
65956--66234
141
2.0
137
95
2
495
44
10
14
31
1.78
71053--71083
2
15.5
2
100
0
62
0
48
0
51
1.00
74371--74403
12
2.8
12
100
0
66
51
6
9
33
1.58
74694--74797
51
2.0
51
88
3
156
45
26
8
19
1.79
94347--94391
22
2.0
22
100
0
90
46
17
8
26
1.78
100566--100637
26
2.8
26
97
0
135
51
2
8
37
1.47
114979--115003
2
12.5
2
100
0
50
48
0
0
52
1.00
126886--127029
30
4.8
30
81
0
135
31
29
9
29
1.88
130347--130530
31
6.0
31
81
1
192
17
23
24
34
1.96
130376--130530
62
2.5
62
87
0
229
18
23
23
34
1.96
138632--138723
29
3.2
29
81
6
132
17
39
10
32
1.84
138643--138733
29
3.1
29
81
6
130
16
37
9
36
1.82
147307--147344
19
2.0
19
94
0
67
47
18
15
18
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165987--170826
331
14.7
328
76
8
4162
32
14
16
35
1.89
170829--173684
331
8.6
331
87
2
4009
35
14
17
33
1.90

Tables:   1

The End!