Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015439.1 Corchorus olitorius cultivar O-4 contig15472, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56108

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
48
0
0
51
1.00
147--177
15
2.0
15
93
6
53
32
6
3
58
1.40
11421--11461
20
2.0
20
100
0
82
24
19
26
29
1.98
16453--16618
34
5.0
34
76
18
152
32
13
19
34
1.90
16600--16634
17
2.1
17
94
0
61
34
14
25
25
1.94
16620--16703
41
2.0
41
100
0
168
27
14
28
29
1.95
38229--38272
15
2.9
15
80
6
54
72
13
9
4
1.24
40983--41039
19
2.8
20
86
5
80
35
12
22
29
1.91
42109--42293
49
3.9
49
94
4
310
24
16
28
30
1.96
46620--46652
3
11.3
3
87
6
50
27
33
0
39
1.57
52975--53013
21
1.9
20
85
15
53
38
10
20
30
1.86

Tables:   1

The End!