genome.fa.s15440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015440.1 Corchorus olitorius cultivar O-4 contig15473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123737

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--34	2	17.0	2	100	0	68	50	0	0	50	1.00
2254--2320	32	2.1	32	100	0	134	44	31	2	20	1.67
6893--6917	13	1.9	13	100	0	50	32	32	16	20	1.94
8617--8740	31	4.1	31	80	2	144	33	26	24	15	1.95
13632--13680	21	2.5	20	81	15	57	16	0	6	77	0.96
13630--13678	25	2.0	25	100	0	98	16	0	8	75	1.03
17740--17778	18	2.2	18	95	0	69	35	23	5	35	1.77
18717--18802	42	2.0	42	84	4	111	36	20	6	36	1.80
20464--20493	15	2.1	14	93	6	51	36	0	0	63	0.95
25570--25639	36	1.9	36	88	0	104	37	8	25	28	1.85
33137--33180	21	2.1	21	100	0	88	52	13	22	11	1.72
32919--33370	235	1.9	235	98	0	868	39	16	14	28	1.89
36412--36533	64	1.9	64	91	3	201	36	18	10	35	1.85
36487--37143	333	2.0	334	82	3	815	37	15	15	31	1.89
37549--37590	22	1.9	22	85	0	57	4	33	42	19	1.72
37764--42779	333	15.2	333	86	4	6439	35	17	15	31	1.91
40463--42830	662	3.6	658	82	5	2759	36	16	15	31	1.90
45498--45568	20	3.5	20	72	0	70	30	26	7	35	1.83
45494--45823	32	9.2	41	83	13	270	33	26	7	31	1.85
45551--45823	32	8.0	32	84	12	357	34	26	8	30	1.86
45629--45691	20	3.1	20	69	2	63	34	30	4	30	1.78
45511--45755	105	2.3	104	95	1	436	33	27	8	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45765--45823	20	2.9	20	71	2	55	32	28	6	32	1.83
45517--45823	104	2.9	101	86	10	381	33	27	8	30	1.86
45551--45823	136	2.0	137	97	0	521	34	26	8	30	1.86
57899--57962	17	3.6	18	71	14	51	50	7	7	34	1.60
59800--59824	12	2.1	12	100	0	50	8	8	24	60	1.52
63011--63059	17	2.9	17	84	0	62	38	18	18	24	1.93
63346--63425	42	1.9	42	92	0	133	48	8	22	20	1.76
64692--64741	17	2.9	17	84	0	64	44	16	6	34	1.72
69176--69266	44	2.1	44	89	4	139	30	15	23	30	1.95
69185--69251	22	3.0	22	65	16	57	28	17	22	31	1.97
71911--71956	21	2.2	21	88	0	65	41	15	17	26	1.88
71918--71984	21	3.2	21	87	8	84	34	19	13	32	1.91
71947--71994	21	2.3	21	96	0	87	35	27	10	27	1.89
93193--93232	22	1.9	22	90	10	66	40	12	35	12	1.81
97402--97429	12	2.3	12	100	0	56	25	7	0	67	1.15
98604--98748	72	2.0	72	100	0	290	26	18	20	34	1.96
105473--105510	19	2.0	20	94	5	69	55	21	0	23	1.44
110343--110403	30	2.0	30	90	6	97	49	3	21	26	1.65

Tables:   1

The End!