Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015443.1 Corchorus olitorius cultivar O-4 contig15476, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79952

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--960
330
2.8
332
95
1
1687
32
16
16
34
1.92
4078--4102
3
8.3
3
100
0
50
68
0
32
0
0.90
5791--5824
17
2.0
17
88
11
52
82
0
2
14
0.79
8166--8442
148
1.9
148
93
0
473
36
16
15
32
1.90
12171--12364
105
1.9
104
97
1
370
42
15
13
27
1.86
21809--21951
70
2.0
70
98
0
277
30
18
13
37
1.90
24215--24445
114
2.0
114
97
0
435
18
24
17
39
1.91
28885--29103
119
1.8
118
89
2
296
33
28
19
18
1.95
31418--31602
98
1.9
99
84
5
250
30
20
17
31
1.95
49296--50803
318
4.7
317
77
9
1220
35
15
15
33
1.89
51131--51180
15
3.2
15
85
5
55
56
4
0
40
1.18
51427--51462
8
4.2
8
86
13
54
52
0
22
25
1.47
62950--62986
19
1.9
19
100
0
74
21
2
27
48
1.63
79751--79918
31
5.6
29
70
11
115
33
19
19
27
1.96
79755--79917
60
2.7
59
89
5
238
34
19
19
26
1.95
79786--79886
29
3.4
29
70
15
89
33
17
20
27
1.96

Tables:   1

The End!