Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015448.1 Corchorus olitorius cultivar O-4 contig15481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109681

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1608--1653
5
9.4
5
92
2
76
58
0
2
39
1.10
4246--5642
331
4.3
324
78
7
1247
33
13
15
36
1.88
5666--5723
30
2.0
30
86
3
82
39
13
25
20
1.90
8505--8583
31
2.5
32
91
4
142
20
13
22
43
1.87
23662--23799
31
4.5
30
83
3
114
15
24
28
31
1.95
23650--23799
62
2.4
61
81
3
174
14
24
27
33
1.94
24415--24500
44
2.0
44
97
0
163
32
24
9
33
1.87
24590--24661
35
2.1
35
97
0
135
37
15
26
20
1.92
29879--29903
13
1.9
13
100
0
50
28
0
0
72
0.86
30900--31931
333
3.1
330
84
5
1329
32
14
16
36
1.89
35656--35712
26
2.2
26
96
0
105
26
35
10
28
1.89
46094--46169
31
2.4
32
80
4
91
38
30
21
10
1.87
53565--53725
78
2.1
78
95
0
286
50
1
14
33
1.54
59535--59598
21
3.2
20
80
8
76
35
12
20
31
1.90
81119--81159
5
8.4
5
84
13
50
80
2
17
0
0.82
81119--81155
18
2.0
19
89
5
58
81
2
16
0
0.81
81278--81302
3
8.3
3
100
0
50
0
32
0
68
0.90
84726--84877
77
2.0
77
96
0
277
38
17
16
27
1.91
90821--90901
37
2.2
37
97
2
153
49
16
13
20
1.79
90912--90987
35
2.2
35
90
0
116
32
19
21
26
1.97
90994--91096
51
2.0
51
94
0
179
42
12
23
21
1.87
106542--106580
6
6.7
6
86
13
55
2
0
10
87
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106542--106580
18
2.2
18
95
4
71
2
0
10
87
0.65
109634--109681
1
48.0
1
95
0
87
0
0
0
97
0.03

Tables:   1

The End!