Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015449.1 Corchorus olitorius cultivar O-4 contig15482, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 42267
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:7167 original size:21 final size:21

Alignment explanation


    Indices: 7141--7181  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       7131 GCAAAACCCT

                                 
       7141 TTTATCTTCAAAACCCAGAAA
          1 TTTATCTTCAAAACCCAGAAA

                                
       7162 TTTATCTTCAAAACCCAGAA
          1 TTTATCTTCAAAACCCAGAA

       7182 TTTGTTGTCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.41, C:0.24, G:0.05, T:0.29


Consensus pattern (21 bp):   
TTTATCTTCAAAACCCAGAAA

Found at i:32513 original size:20 final size:20

Alignment explanation


    Indices: 32488--32528  Score: 82
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      32478 TAATGGTTAA

                                
      32488 TTTGTCCATTTCTTACAAGT
          1 TTTGTCCATTTCTTACAAGT

                                
      32508 TTTGTCCATTTCTTACAAGT
          1 TTTGTCCATTTCTTACAAGT

             
      32528 T
          1 T

      32529 CAAGGATCGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   21  1.00

ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51


Consensus pattern (20 bp):   
TTTGTCCATTTCTTACAAGT

Found at i:35798 original size:46 final size:46

Alignment explanation


    Indices: 35731--35823  Score: 186
    Period size: 46  Copynumber: 2.0  Consensus size: 46

      35721 GCATTACGAT

                                                          
      35731 TAATCTAGTTGCTGATTTCGATGGATTTGACTTCAGGCTTCTTCTC
          1 TAATCTAGTTGCTGATTTCGATGGATTTGACTTCAGGCTTCTTCTC

                                                          
      35777 TAATCTAGTTGCTGATTTCGATGGATTTGACTTCAGGCTTCTTCTC
          1 TAATCTAGTTGCTGATTTCGATGGATTTGACTTCAGGCTTCTTCTC

             
      35823 T
          1 T

      35824 TCCATCTTTG


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   47  1.00

ACGTcount: A:0.17, C:0.19, G:0.19, T:0.44


Consensus pattern (46 bp):   
TAATCTAGTTGCTGATTTCGATGGATTTGACTTCAGGCTTCTTCTC
Done.