genome.fa.s15453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015453.1 Corchorus olitorius cultivar O-4 contig15486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137891

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4734--4875	73	1.9	73	98	0	275	40	12	9	37	1.75
6132--6180	24	2.0	24	88	0	71	40	0	28	30	1.57
8746--8772	13	2.1	13	100	0	54	33	22	22	22	1.97
9330--9547	111	1.9	113	86	3	307	37	15	17	29	1.91
11944--11997	26	2.1	26	82	6	65	48	1	0	50	1.11
14800--14891	31	2.9	31	81	3	112	18	21	25	34	1.96
31460--31502	15	2.9	14	83	10	59	72	4	23	0	1.04
32370--32474	54	1.9	54	94	0	183	38	4	20	37	1.73
35622--35739	59	2.0	59	88	0	173	38	15	11	34	1.82
46541--46670	33	3.9	33	93	0	206	39	6	22	32	1.79
48444--48580	33	4.2	33	90	1	195	37	6	25	30	1.81
57273--57297	10	2.5	10	100	0	50	0	8	0	92	0.40
62825--62876	26	2.0	26	88	3	77	42	9	5	42	1.61
67550--67595	1	46.0	1	93	0	65	2	4	0	93	0.41
67540--67588	9	4.6	11	79	20	52	4	6	2	87	0.72
67540--67588	21	2.3	21	96	0	89	4	6	2	87	0.72
75890--76149	134	1.9	135	95	0	468	39	9	11	39	1.74
76182--76242	13	5.0	11	75	25	52	60	1	0	37	1.07
76182--76256	37	2.0	37	100	0	150	60	2	0	37	1.11
78355--78411	27	2.0	27	83	10	69	24	19	1	54	1.54
80094--80126	14	2.4	14	100	0	66	36	30	6	27	1.81
81876--81926	5	10.2	5	76	23	54	0	37	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81876--81926	20	2.5	20	84	12	68	0	37	0	62	0.95
96590--96833	86	2.8	86	92	0	382	31	20	20	27	1.97
96761--96960	99	2.0	100	86	2	278	30	19	20	30	1.97
117351--119229	330	5.8	329	76	9	1554	33	13	15	37	1.88
119308--121214	331	5.8	331	83	3	2342	32	14	15	36	1.89
119303--121165	994	1.9	992	86	3	2661	32	14	15	36	1.89
122666--122711	6	7.7	6	85	0	56	0	17	60	21	1.35
122766--122822	27	2.1	27	90	0	87	15	7	56	21	1.63
124152--124195	21	2.1	21	87	8	63	15	6	47	29	1.72
124276--124374	15	6.6	15	77	8	103	13	2	60	24	1.43
124267--124349	30	2.8	30	92	0	139	12	2	63	21	1.39
124337--124391	21	2.6	21	75	8	58	10	1	56	30	1.44
124337--124416	42	1.9	42	84	0	106	11	3	53	31	1.54
130126--134322	331	12.7	329	80	5	4301	32	15	15	37	1.89
130126--134322	663	6.4	663	91	2	6189	32	15	15	37	1.89
136453--136618	30	5.3	30	73	18	133	41	19	15	24	1.89
136457--136557	36	3.0	34	84	8	129	39	19	14	25	1.90
136525--136641	61	1.9	61	87	0	171	42	14	15	27	1.86

Tables:   1

The End!