genome.fa.s15454.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015454.1 Corchorus olitorius cultivar O-4 contig15487, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99118

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342--4237	332	11.8	330	76	9	3220	33	14	16	36	1.89
5717--5779	3	21.0	3	80	0	63	6	4	61	26	1.40
5717--5766	21	2.4	21	93	0	82	6	4	62	28	1.37
5817--5878	24	2.6	24	80	10	56	12	4	62	19	1.47
5871--5941	18	3.6	18	71	20	52	9	1	59	29	1.38
8200--8235	17	2.1	17	89	0	54	38	19	11	30	1.86
9671--13403	332	11.4	330	79	6	3319	36	15	14	33	1.87
13728--13790	8	7.8	8	80	19	69	52	0	22	25	1.47
13731--13786	5	12.4	5	75	21	61	53	0	21	25	1.46
13731--13790	13	4.8	13	74	25	67	53	0	21	25	1.46
13728--13771	21	2.1	21	100	0	88	52	0	22	25	1.48
13595--13976	200	1.9	194	91	5	624	47	5	13	33	1.67
13928--13976	8	6.2	8	76	21	50	57	0	18	24	1.41
14788--14836	24	2.0	24	92	0	80	12	0	63	24	1.29
19074--19101	2	14.0	2	100	0	56	50	0	0	50	1.00
20591--20628	9	4.2	9	93	0	67	36	7	0	55	1.29
20587--20632	18	2.9	15	76	17	56	34	10	0	54	1.36
22484--22513	14	2.1	14	93	0	51	23	13	10	53	1.69
21280--24520	333	9.7	330	75	11	2254	34	14	14	37	1.86
21392--23827	654	3.7	644	74	12	1952	34	14	14	37	1.86
25175--25199	11	2.3	11	100	0	50	28	12	36	24	1.91
25186--25341	84	1.9	84	97	2	296	21	26	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33751--33775	13	1.9	13	100	0	50	64	0	12	24	1.27
43951--44131	90	2.0	91	94	1	319	36	12	17	33	1.87
44424--44550	61	2.1	60	92	2	211	29	21	12	36	1.90
45931--46002	35	2.1	35	97	0	135	26	23	12	37	1.90
46185--46248	31	2.1	31	100	0	128	42	12	20	25	1.87
46355--46420	33	2.0	33	100	0	132	45	21	6	27	1.75
46488--46572	41	2.1	41	100	0	170	28	21	16	34	1.95
56451--56676	76	2.9	77	92	1	382	35	3	13	47	1.61
57676--59928	332	6.8	328	78	9	2029	35	15	14	33	1.88
60045--60069	12	2.1	12	100	0	50	28	16	8	48	1.74
84926--84984	31	1.9	31	89	0	91	23	35	15	25	1.94
98371--98476	31	3.5	31	84	5	110	31	20	7	40	1.80

Tables:   1

The End!