Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015455.1 Corchorus olitorius cultivar O-4 contig15488, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62729

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1086--1133
17
2.8
17
87
6
62
22
22
20
33
1.97
13506--13728
60
3.9
60
79
11
277
29
17
25
27
1.98
13506--13708
110
1.8
110
94
0
361
28
18
26
26
1.98
16953--17191
38
5.9
38
73
12
190
29
10
23
37
1.88
16951--17200
82
3.0
82
88
1
374
29
10
22
37
1.88
19260--19542
144
2.0
144
91
0
458
26
18
17
37
1.93
23948--24029
21
3.8
21
68
27
64
54
1
3
40
1.26
23950--23998
25
2.0
25
84
8
64
59
0
0
40
0.98
26019--26062
11
3.9
11
85
5
52
34
0
15
50
1.45
26255--26293
2
19.5
2
100
0
78
48
0
0
51
1.00
26421--26457
13
2.8
13
87
0
56
16
43
8
32
1.77
26461--26537
40
1.9
40
91
0
127
38
15
14
31
1.87
33291--33376
45
1.9
44
97
2
163
37
27
15
19
1.92
34363--34450
25
3.4
25
67
27
76
44
3
26
26
1.70
34387--34471
24
3.4
23
65
29
57
47
3
27
22
1.68
34367--34471
52
2.0
52
100
0
210
44
3
26
24
1.71
41954--41979
11
2.4
11
100
0
52
53
0
0
46
1.00
41952--41982
15
2.1
14
94
5
53
54
0
0
45
0.99
53438--53484
19
2.6
18
83
6
58
21
21
23
34
1.97
54159--54188
2
15.0
2
100
0
60
50
0
0
50
1.00
54527--54610
31
2.6
31
88
9
125
25
10
22
41
1.86
55198--55304
32
3.4
31
81
5
133
26
25
27
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60850--60940
25
3.6
25
90
1
146
25
14
24
36
1.93
61261--62712
333
4.4
331
83
3
1778
36
17
14
32
1.89
61261--62712
662
2.2
666
85
3
1921
36
17
14
32
1.89

Tables:   1

The End!