Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015457.1 Corchorus olitorius cultivar O-4 contig15490, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18663
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Found at i:7929 original size:122 final size:122
Alignment explanation
Indices: 7731--7951 Score: 379
Period size: 122 Copynumber: 1.8 Consensus size: 122
7721 TCTGATTTTG
* ** * *
7731 CTTTTTCTGCTCTGATGGTTTCTTGATAGTGTTTCTTCTCTTCTGCAGTTGTCTCCCCATTGGAT
1 CTTTTTCTGCTCTGATGGTTTCTAGATAACGTTTCTTCTCCTCTGCAGTTGTCTCCCCATTGGAG
* *
7796 CTGAGCGTATCCTTGTGGCAGCTAGGATTGCCTTCAGATTCTTTTGTTGTAAGTTTC
66 CTGAGCATATCCTTGTGGCAGCAAGGATTGCCTTCAGATTCTTTTGTTGTAAGTTTC
7853 CTTTTTCTGCTCTGATGGTTTCTAGATAACGTTTCTTCTCCTCTGCAGTTGTCTCCCCATTGGAG
1 CTTTTTCTGCTCTGATGGTTTCTAGATAACGTTTCTTCTCCTCTGCAGTTGTCTCCCCATTGGAG
7918 CTGAGCATATCCTTGTGGCAGCAAGGATTGCCTT
66 CTGAGCATATCCTTGTGGCAGCAAGGATTGCCTT
7952 GTTGTCATGA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 92 1.00
ACGTcount: A:0.14, C:0.23, G:0.21, T:0.42
Consensus pattern (122 bp):
CTTTTTCTGCTCTGATGGTTTCTAGATAACGTTTCTTCTCCTCTGCAGTTGTCTCCCCATTGGAG
CTGAGCATATCCTTGTGGCAGCAAGGATTGCCTTCAGATTCTTTTGTTGTAAGTTTC
Found at i:8075 original size:20 final size:20
Alignment explanation
Indices: 8016--8082 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
8006 CATTGAGGGC
8016 CAATGTGAATTAAGGCAAGTT
1 CAATGTG-ATTAAGGCAAGTT
* ** *
8037 CAATGTCATTTGGGAAAGTT
1 CAATGTGATTAAGGCAAGTT
**
8057 GGATGTGATTAAGGCAAGTT
1 CAATGTGATTAAGGCAAGTT
8077 CAATGT
1 CAATGT
8083 CATTTGGATG
Statistics
Matches: 34, Mismatches: 12, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
20 28 0.82
21 6 0.18
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (20 bp):
CAATGTGATTAAGGCAAGTT
Found at i:8105 original size:32 final size:32
Alignment explanation
Indices: 8055--8289 Score: 364
Period size: 32 Copynumber: 7.1 Consensus size: 32
8045 TTTGGGAAAG
8055 TTGGATGTG-ATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
8086 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
8118 TTGGACGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
8150 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
8182 TTGGGAAAGTTGGATGTTATTAAGGCAAGTTCAATGTCAT
1 TT-GG--A--T-G-TG-AATTAAGGCAAGTTCAATGTCAT
8222 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
*
8254 TTGGATGTGAATTAAGGCAAGTTCAATGTGAT
1 TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
8286 TTGG
1 TTGG
8290 GAAAGTTGGA
Statistics
Matches: 190, Mismatches: 5, Indels: 17
0.90 0.02 0.08
Matches are distributed among these distances:
31 9 0.05
32 143 0.75
33 4 0.02
34 1 0.01
35 2 0.01
37 2 0.01
38 1 0.01
39 4 0.02
40 24 0.13
ACGTcount: A:0.30, C:0.09, G:0.26, T:0.34
Consensus pattern (32 bp):
TTGGATGTGAATTAAGGCAAGTTCAATGTCAT
Found at i:8204 original size:104 final size:104
Alignment explanation
Indices: 8086--8329 Score: 427
Period size: 104 Copynumber: 2.3 Consensus size: 104
8076 TCAATGTCAT
8086 TTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTCATT
1 TTGGATGT-AATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTCATT
8151 TGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAG
65 TGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAG
* *
8191 TTGGATGTTATTAAGGCAAGTTCAATGTCATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTT
1 TTGGATGTAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTCATTT
*
8256 GGATGTGAATTAAGGCAAGTTCAATGTGATTTGGGAAAG
66 GGATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAG
*
8295 TTGGATGTGAA-TAAGGCAAGTTCAATGTCAATTGG
1 TTGGATGT-AATTAAGGCAAGTTCAATGTCATTTGG
8330 GAAAGTTAAA
Statistics
Matches: 133, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
104 124 0.93
105 9 0.07
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (104 bp):
TTGGATGTAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTCATTT
GGATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAG
Found at i:8211 original size:20 final size:20
Alignment explanation
Indices: 8150--8212 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
8140 TCAATGTCAT
8150 TTGGATGTGAATTAAGGCAAG
1 TTGGATGT-AATTAAGGCAAG
** * ** *
8171 TTCAATGTCATTTGGGAAAG
1 TTGGATGTAATTAAGGCAAG
*
8191 TTGGATGTTATTAAGGCAAG
1 TTGGATGTAATTAAGGCAAG
8211 TT
1 TT
8213 CAATGTCATT
Statistics
Matches: 30, Mismatches: 12, Indels: 1
0.70 0.28 0.02
Matches are distributed among these distances:
20 24 0.80
21 6 0.20
ACGTcount: A:0.30, C:0.06, G:0.29, T:0.35
Consensus pattern (20 bp):
TTGGATGTAATTAAGGCAAG
Found at i:8218 original size:20 final size:20
Alignment explanation
Indices: 8160--8222 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
8150 TTGGATGTGA
8160 ATTAAGGCAAGTTCAATGTC
1 ATTAAGGCAAGTTCAATGTC
** * ** *
8180 ATTTGGGAAAGTTGGATGTT
1 ATTAAGGCAAGTTCAATGTC
8200 ATTAAGGCAAGTTCAATGTC
1 ATTAAGGCAAGTTCAATGTC
8220 ATT
1 ATT
8223 TGGATGTGAA
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.35
Consensus pattern (20 bp):
ATTAAGGCAAGTTCAATGTC
Found at i:8264 original size:136 final size:136
Alignment explanation
Indices: 8018--8289 Score: 517
Period size: 136 Copynumber: 2.0 Consensus size: 136
8008 TTGAGGGCCA
8018 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGATTAAGGCAAGTTCAATGT
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGATTAAGGCAAGTTCAATGT
8083 CATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTC
66 CATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTC
8148 ATTTGG
131 ATTTGG
*
8154 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTTATTAAGGCAAGTTCAATGT
1 ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGATTAAGGCAAGTTCAATGT
* *
8219 CATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGATGTGAATTAAGGCAAGTTCAATGTG
66 CATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTC
8284 ATTTGG
131 ATTTGG
8290 GAAAGTTGGA
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 133 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (136 bp):
ATGTGAATTAAGGCAAGTTCAATGTCATTTGGGAAAGTTGGATGTGATTAAGGCAAGTTCAATGT
CATTTGGATGTGAATTAAGGCAAGTTCAATGTCATTTGGACGTGAATTAAGGCAAGTTCAATGTC
ATTTGG
Found at i:8322 original size:20 final size:20
Alignment explanation
Indices: 8258--8346 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 20
8248 TGTCATTTGG
*
8258 ATGTGAATTAAGGCAAGTTCA
1 ATGTGAA-TAAGGAAAGTTCA
* ** **
8279 ATGTGATTTGGGAAAGTTGG
1 ATGTGAATAAGGAAAGTTCA
*
8299 ATGTGAATAAGGCAAGTTCA
1 ATGTGAATAAGGAAAGTTCA
* ** *
8319 ATGTCAATTGGGAAAGTTAA
1 ATGTGAATAAGGAAAGTTCA
8339 ATGTGAAT
1 ATGTGAAT
8347 GTGCCGCGTG
Statistics
Matches: 50, Mismatches: 18, Indels: 1
0.72 0.26 0.01
Matches are distributed among these distances:
20 44 0.88
21 6 0.12
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (20 bp):
ATGTGAATAAGGAAAGTTCA
Found at i:8343 original size:40 final size:40
Alignment explanation
Indices: 8258--8346 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
8248 TGTCATTTGG
* * **
8258 ATGTGAATTAAGGCAAGTTCAATGTGATTTGGGAAAGTTGG
1 ATGTGAA-TAAGGCAAGTTCAATGTCAATTGGGAAAGTTAA
8299 ATGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTAA
1 ATGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTAA
8339 ATGTGAAT
1 ATGTGAAT
8347 GTGCCGCGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 37 0.84
41 7 0.16
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (40 bp):
ATGTGAATAAGGCAAGTTCAATGTCAATTGGGAAAGTTAA
Found at i:9825 original size:32 final size:32
Alignment explanation
Indices: 9784--9851 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
9774 AACTAATGAG
9784 AGGCCCAATTTTTTGACATTTTAGATAAAAAT
1 AGGCCCAATTTTTTGACATTTTAGATAAAAAT
9816 AGGCCCAATTTTTTGACATTTTAGATAAAAAT
1 AGGCCCAATTTTTTGACATTTTAGATAAAAAT
9848 AGGC
1 AGGC
9852 GCATTTAGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (32 bp):
AGGCCCAATTTTTTGACATTTTAGATAAAAAT
Found at i:11776 original size:333 final size:333
Alignment explanation
Indices: 10747--13742 Score: 4092
Period size: 333 Copynumber: 9.1 Consensus size: 333
10737 GGGCCTCAAA
* * * * * ** *
10747 TTTTTCCAACATTTTAGCTGAAATCATGTACTAATCATCATAGTTTTT-GCTAAAAACGTGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * * * * * * *
10811 GAAGCCCCGGCTCAGTTTTGCATGA-TTTTTGACACCCAAAATCCATGAAATATCTATATTAATA
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTG-CGCCCAGACTCCATGAAATATCTATATTCATC
* ** * * *
10875 TAAGTGAATCTCGGTTGCATTGGATTGAAGGATTTGTTTTTACGAGCATCTGAATAATGATTCGA
130 TAACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGA
* *
10940 TTTAATCAGAAATTAATTCAGAAAAAATAGGGAAAACGATATTAGATGCTCGAAAAGCCCTTCAA
195 TTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAA
* * * *
11005 TCTTTTTGACATTGAATTATATATA--TTTATGAGAATTTTGGTCAAAAATTGAGGAAAAATTTT
260 TCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTT
*
11068 TCGAATCTT
325 TCGGATCTT
*
11077 TTTTTGCAAAATTTTAGCCGAAATCGTG---T----A-CACGGTTTTTGGCTAAAAACGTGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * *
11134 AAGGCCCCGACTCAGTTTTGCTTCATTTTTTGCGGCCAGACTCCATGAAATATCTATATTCATCT
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
* * *
11199 AACTGAATCTCGGCCACATTGGATTTAAGGATTTATTTTTACGAGCATCTGAATCATGTTTTGAT
131 AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAT
* * * **
11264 TTAATCAGAAATTAATTAAGAAAAAATAGGAAAAGCGATATTATATGCTTGAAAAGCCCTTCAAT
196 TTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAAT
* * *
11329 CTTGTTGGCGTTGAATTATATACATTTTTATGAGATTTGTGGTCAAAAATTGAGGAAATA-TTTT
261 CTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTTT
*
11393 CGGATCTA
326 CGGATCTT
11401 TTTTTGCAAAATTTTAGCCGTAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTC
1 TTTTTGCAAAATTTTAGCCG-AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTC
* * * * * * * *
11466 TGGGGCCCCAACTCAGTTTTGCTTGATTTTTGGTGCCCATACTACATGGAATATCTATATTCATC
65 CGAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATC
* * * *
11531 TAACTAAATCTCAGCCGCATTGGTTTTAAGGATTT-TTTTTACGAGCATCTGAATCATGATTCGA
130 TAACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGA
* * * *
11595 TTTAATGAGAAATTACTTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAACTCTTCAA
195 TTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAA
* *
11660 TATTTTTGGCGTTGAATTATATATATATTTTTATGTGAATTGTGGTCAAAAATTGAGGAAATATT
260 TCTTTTTGGCGTTGAA-T-TATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATT
11725 TTTCGGATCTT
323 TTTCGGATCTT
* *
11736 TTTTTGCAAAATTTTAG-CAAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * * * * *
11800 AAGACCCCGACTAAGTTTTGCTTGATTTTTTGCGGCCGGACTCCATGAAATATCTATATTAATCT
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
* *
11865 AAGC-GAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAAT-TAAATCATGTTTCG
131 AA-CTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGC-ATCTGAATCATGTTTCG
**
11928 ATTTAAGGAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCA
194 ATTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCA
11993 ATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTG-GTGAAATATT
259 ATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAG-GAAATATT
12057 TTTCGGATCTT
323 TTTCGGATCTT
* * * *
12068 TTTTTGCAAAATTTTAGCCGAAATCATGTACTGACCATCACAGTTTTTGGCTAAAAACGCGTTCT
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* *
12133 GAGGCCCCGACTAAGTTTTGCTTGATTTTTTGCGGCCAGACTCCATGAAATATCTATATTCATCT
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
* * *
12198 AACCGAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGAT
131 AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAT
* ** * * *
12263 TTAATCAGAAATAAATTCAGAAAAAATAGGAAAAGTGATATTATATGC-CTGAAAAGTCCTTCAA
196 TTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTC-AAAAAGCCCTTCAA
*
12327 TCTTTTTGCCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTT
260 TCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTT
*
12392 TCGGATCTA
325 TCGGATCTT
* *
12401 TTTTTGCAAAATTTTAGTCGAAATCGTGTACT-ACCATCACAGTTTTTGGCTAAAAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * * * *
12465 GGGGCCTCGACTCAGTTCTGCTTGATTTTTGGCGCCCAGACTCCATGGAATATCTATATTCATCT
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
* *
12530 AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCGGAATCATGATTCGAT
131 AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAT
* * * *
12595 TTAATCAGAAATTAATTTAGAAAAAATAGGAAAAACGATATTAGAAGCTC-GAAAGCACTTCAAT
196 TTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAAT
* * * * *
12659 CTTTTTGGCATTGAATTATATATATTTTTATGAGAATTTTGGTAAAAAAATTCAGGAAAAATTTT
261 CTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGT-CAAAAATTGAGGAAATATTTT
12724 TCGGATCTT
325 TCGGATCTT
* * * *
12733 TTTTTGCAAAATTTTAGACGGAATCGTGTATTAACCATCACGGTTTTTGGCTAAAAACGTGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
*
12798 GAGGCCTCGACTCAGTTTTGCTTGATTTTTTG-GCAGCCAGACTCCATGAAATATCTATATTCA-
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGC--CCAGACTCCATGAAATATCTATATTCAT
* * *
12861 -T--CT-AA-C-CGGCCACATTGGATTTAATGATTTGTTTTTACGAGCATCCGAATCATGTTTCG
129 CTAACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCG
* ** ** * **
12920 ATTTAATCAAAAATTAATTTTGAAAAAAATAGGAAAAGTGATATTATATGCTTGAAAAGCCCTTC
194 ATTTAATCAGAAATTAATTCAG-AAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTC
* * * *
12985 AATCTTTTTGCCG-AGAATTATATATATTTTTATGAGAATTTTGGTCAAAAATTAAGGAAATATT
258 AATCTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATT
*
13049 TTTCGGATCTA
323 TTTCGGATCTT
*
13060 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAGAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * *
13125 G-GGACCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCATACTCCATGGAATATCTATATTCATG
66 GAGG-CCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATC
* * * * * *
13189 TAACAGAATCTCGGCGGCATTTGTTTTAAGGATTTGTTTTTACGAGTATCTGAAACATGTTTCGA
130 TAACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGA
* *
13254 TTTAATGAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATACTCAAAAAGCCCTTCAA
195 TTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAA
* * * * **
13319 TCATTTTGGCGTTGAATTATATATATATTTT-TAAGAATTATGGTAAAAAATTGAATAAATATTT
260 TCTTTTTGGCGTTGAATTATATATAT-TTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTT
13383 TTCGGATCTT
324 TTCGGATCTT
*
13393 TTTTTACAAAATTTTAGCCGAAATCGTG----AACCATCACGGTTTTTGGCTAAAAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
* * * * * * *
13454 GGGGCCCCGACTCTGTTTTGC----TTTTTGGCGCCCATACTCAATGGAATATCTATATTCATTT
66 GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
* * * *
13515 AATTGAATCTCGGTCGCATTGGTTTTAAGGATTTGTTTTTACGAGCATCTGAAACATGTTTCGAT
131 AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAT
* * *
13580 TTAATGAGAAATTAATTCCGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCACTTCAAT
196 TTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAAT
* *
13645 CTTTTTTGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATTTTTTT
261 CTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTTT
13710 CGGATCTT
326 CGGATCTT
13718 TTTTTGCAAAATTTTAGCCGAAATC
1 TTTTTGCAAAATTTTAGCCGAAATC
13743 ATACTGTTTT
Statistics
Matches: 2377, Mismatches: 244, Indels: 95
0.88 0.09 0.03
Matches are distributed among these distances:
322 8 0.00
323 200 0.08
324 40 0.02
325 281 0.12
326 27 0.01
327 184 0.08
328 61 0.03
329 71 0.03
330 29 0.01
331 54 0.02
332 469 0.20
333 749 0.32
334 174 0.07
335 30 0.01
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (333 bp):
TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCC
GAGGCCCCGACTCAGTTTTGCTTGATTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCT
AACTGAATCTCGGCCGCATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAT
TTAATCAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTCAAT
CTTTTTGGCGTTGAATTATATATATTTTTATGAGAATTGTGGTCAAAAATTGAGGAAATATTTTT
CGGATCTT
Found at i:14716 original size:331 final size:327
Alignment explanation
Indices: 13749--15968 Score: 2458
Period size: 331 Copynumber: 6.7 Consensus size: 327
13739 AATCATACTG
* * * * * **
13749 TTTTTTGCGCCCAGAGTCCATGAAATATCTATATTCATCTAGCTGAATCTTGGCCGTATTGGTTT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGG-TT
* ** * *
13814 TAAGGAATTGTTCCTACGAGCATCTGAATCATGTTTCTATTTAATAAGAAATTAATTTAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-A-AAATTAATTCAGAAAAA
* * * * *
13879 AAAGGAAGAGCGATATTAGAAT-ATCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATT
128 ATAGGAAAAGCGATATTAG-ATGCTTG-AAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATT
* * * * * *
13943 TTTATA-AGTATTGTGGCCAAAAATTGCGGAAAAAATTTTCGGGTCA-TTTTCTGTAAATTTTTA
191 TTTATAGA-TATTGTGGCAAAAAATTGAGG-AAAAATTTTTGGGTCATTTTTTTGCAAAATTTTA
* * **
14006 GCCAAAATCG--T-GT-ACCATCACGGTTTTTGGCTAAAAAC-CTGTTCCAAGGCCCCGACTCAG
254 GCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACAC-GTTCCGGGGCCCCGACTCAG
14066 TTTTGCTTGA
318 TTTTGCTTGA
* * * *
14076 CTTTTT-GCGGCCAAACTCCATGAAATATCTATATTAATCTAATCGAATCTCGGCCACATTGGAT
1 -TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGG-T
* *
14140 TTAAGGAATTGCTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAATTCAG-AAA
64 TTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-A-AAATTAATTCAGAAAA
* ** * **
14204 AATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATATA
127 AATAGGAAAAGCGATATTAGATGCT-TGAAAGCCCTTCAATCTTTTTGGTGTTGAA-T-TATATA
* * *
14269 TTTTTATGAGA-ATTGTGGTAAAAAATTGAGCAAATAATTTTTGGATC-TTTTTTTGCAAAATTT
189 TTTTTAT-AGATATTGTGGCAAAAAATTGAGGAAA-AATTTTTGGGTCATTTTTTTGCAAAATTT
* * * * *
14332 TAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCTCGATTCA
252 TAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCA
*
14397 GTTTTACTTGA
317 GTTTTGCTTGA
* * *
14408 TTTTTGGCGCCCATACTCCATGAAATATCTATATTCATCTAACCGAATCTCGTCCGCATTGGTTT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGTTT
* * * * *
14473 CAATGATTTTTTTTTTCGAGAATCTCAATCATGTTTCGA-TTAATCAATAATTAATTCAGAAAAA
66 -AAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-AA-AATTAATTCAGAAAAA
* * *
14537 ATAGGAAAAGCAATATTAGATGCTTGAAAGCCCTTCAATCTTTGTGGTGTTGAATTATTTATTTT
128 ATAGGAAAAGCGATATTAGATGCTTGAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTTT
* *
14602 T-TCAGATTATTGTGGCAAAAAATTAAGGAAAAATTTGTTGGGTCATTTTTTTGTAAAATTTTAG
193 TAT-AGA-TATTGTGGCAAAAAATTGAGGAAAAATTT-TTGGGTCATTTTTTTGCAAAATTTTAG
* *
14666 CTGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACATTCCGGGGCCCCGACTCAGTT
255 CCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCAGTT
*
14731 TTGCCTGA
320 TTGCTTGA
* *
14739 TTTTTGGCGCCCAGACTCCATGAAGTATCTATATTCATCTAACCAAATC-CAGGCCACATTGGAT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTC-GGCCACATTGG-T
14803 TTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATCAAAATTAATTCAGAAAAA
64 TTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-AAAATTAATTCAGAAAAA
* * *
14868 ATAGGAAAAGCAATATTAGATGGTTAAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTT
128 ATAGGAAAAGCGATATTAGATGCTT-GAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTT
* * ** * * *
14933 TT-TCTGATTATTGTGCCCGAAAATTGAGGAAAAATATTTGGGGT-ACTTTTTTGCAAAA-TTCA
192 TTAT-AGA-TATTGTGGCAAAAAATTGAGGAAAAAT-TTTTGGGTCATTTTTTTGCAAAATTTTA
* * * * * *
14995 TCCGAAATCATTTACAAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCTCCAACTCAGT
254 GCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCAGT
15060 TTTGCTTGA
319 TTTGCTTGA
* * * * * * *
15069 CTTTTGGCACCCAGAGTCCATGAAATATCTATATTAATCTAAGCGAATCTTGGCCACATTTGATT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACA-TTGGTT
* *
15134 TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATCTAATGAGAAATTAATTCAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-A-AAATTAATTCAGAAAAA
* * ** * * *
15199 ATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATGTTTTTGGCGTTGAATTATATTTAT
128 ATAGGAAAAGCGATATTAGATGCT-TGAAAGCCCTTCAATCTTTTTGGTGTTGAATTATA--TAT
* * * * ** **
15264 TTTTATGAGA-ATTGTGGTAAAAAATTGGGGAAATATTTTTCGGATTTTTTTTTTGCGTAATTTT
190 TTTTAT-AGATATTGTGGCAAAAAATTGAGGAAAAATTTTT-GGGTCATTTTTTTGCAAAATTTT
* * *
15328 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGACTCAG
253 AGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCAG
15393 TTTTGCTTGA
318 TTTTGCTTGA
* ** * *
15403 TTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACTAAATCTTGGCCGCATTGGTTT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGG-TT
* ** * *
15468 TAAGGAATTGTTTTCGCGAGCATCTGAATCTTGTTTCGATTTAATAAGAAATTAATTTAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAAT-A-AAATTAATTCAGAAAAA
* *
15533 ATAGG--AAGCGATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTAGTGTTGAATTATATATTT
128 ATAGGAAAAGCGATATTAGATGCTTG-AAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTT
* * *
15596 TTATA-AGTATTGTGGCCAAAAATTGAGGAAAAAATTTTCGGGTCA-TTTTCTGCAAAATTTTAG
192 TTATAGA-TATTGTGGCAAAAAATTGAGG-AAAAATTTTTGGGTCATTTTTTTGCAAAATTTTAG
* * * * * *
15659 CCGAAATTGTATACTAACCATCACCGTTTTTAGCTAAAAACACGTTCCAGGGCCTCGACTCCGTT
255 CCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCAGTT
15724 TTGCTTGA
320 TTGCTTGA
* * * * *
15732 TTTTTTGCGGCCAGACTCCATGAATTATCTATATTCCTCTTACCGAATCTCGGCCACATTGGATT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGG-TT
* * * *
15797 TAAGGATTTATTTTTACAAGCATCCGAATAATGTTTC-AGTTTAATCAGAAATTAATTCAGAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGA-TTTAAT-A-AAATTAATTCAGAAAA
* * *
15861 AATAGGAAAAACGATATTATATGCTTGAAAAGCCTTTCAATCTTTTTGCCGT-TTGAATTATATA
127 AATAGGAAAAGCGATATTAGATGCTTG-AAAGCCCTTCAATCTTTTTG--GTGTTGAA-T-TATA
* * *
15925 TATTTTTATTAAAAATTGTGGTC-AAAAATTGAGGAAATATTTTT
187 TATTTTTA-TAGATATTGTGG-CAAAAAATTGAGGAAAAATTTTT
15969 CGTCACTGGA
Statistics
Matches: 1614, Mismatches: 227, Indels: 96
0.83 0.12 0.05
Matches are distributed among these distances:
325 2 0.00
326 47 0.03
327 107 0.07
328 73 0.05
329 208 0.13
330 223 0.14
331 391 0.24
332 310 0.19
333 26 0.02
334 205 0.13
335 20 0.01
336 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (327 bp):
TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGTTT
AAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAAATTAATTCAGAAAAAATA
GGAAAAGCGATATTAGATGCTTGAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTTTTAT
AGATATTGTGGCAAAAAATTGAGGAAAAATTTTTGGGTCATTTTTTTGCAAAATTTTAGCCGAAA
TCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCCCGACTCAGTTTTGCTT
GA
Found at i:15316 original size:663 final size:662
Alignment explanation
Indices: 13749--15970 Score: 2702
Period size: 663 Copynumber: 3.4 Consensus size: 662
13739 AATCATACTG
* * * * * ** *
13749 TTTTTTGCGCCCAGAGTCCATGAAATATCTATATTCATCTAGCTGAATCTTGGCCGTATTGGTTT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGATT
* ** * * * *
13814 TAAGGAATTGTTCCTACGAGCATCTGAATCATGTTTCTATTTAATAAGAAATTAATTTAGAAAAA
66 TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATTTAATCAGAAATTAATTCAGAAAAA
* * * * *
13879 AAAGGAAGAGCGATATTAGAAT-ATCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATA--TA
131 ATAGGAAAAACAATATTAG-ATGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATTTA
* * * * * *
13941 TTTTTATAAGTATTGTGGCCAAAAATTGCGGAAAAAATTTTCGGGTCA-TTTTCTGTAAATTTTT
195 TTTTTATAAGAATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGT-ATTTTTTTGTAAAATTTT
* * **
14005 AGCCAAAATCG-T-GT-ACCATCACGGTTTTTGGCTAAAAACCTGTTCCAAGGCCCCGACTCAGT
259 AGCCGAAATCGTTACTAACCATCACGGTTTTTGGCTAAAAACC-GTTCCGGGGCCCCGACTCAGT
* * * *
14067 TTTGCTTGACTTTTT-GCGGCCAAACTCCATGAAATATCTATATTAATCTAATCGAATCTCGGCC
323 TTTGCTTGA-TTTTTGGCGCCCAAACTCCATGAAATATCTATATTCATCTAACCAAATC-CGGCC
*
14131 ACATTGGATTTAAGGAATTGCTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAA
386 ACATTGGATTTAAGGAATTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAA
* * **
14196 TTCAG-AAAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTTAATCTTTTTGACGTTGAA
451 TTCAGAAAAAATAGGAAAAGCGATATTAGATGCTCAAAAAGCCCTTCAATCTTTTTGGTGTTGAA
* ** * * * *
14260 TTATATATATTTTTATGAGAATTGTGGTAAAAAATTGAGCAAATAAT-TTTTGGATCTTTTTTTG
516 TTATATAT-TTTTTATGAGTATTGTGGCCAAAAATTGAGGAAA-AATATTTCGGGTCATTTTTTG
* * *
14324 CAAAATTTTAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCC
579 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCC
* *
14389 TCGATTCAGTTTTACTTGA
644 TCGACTCAGTTTTGCTTGA
* * *
14408 TTTTTGGCGCCCATACTCCATGAAATATCTATATTCATCTAACCGAATCTCGTCCGCATTGG-TT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGATT
* * * *
14472 TCAATGATTTTTTTTTTCGAG-AATCTCAATCATGTTTCGA-TTAATCA-ATAATTAATTCAGAA
66 T-AAGGATTTGTTTTTACGAGCAA-CTGAATCATGTTTCGATTTAATCAGA-AATTAATTCAGAA
* * * *
14534 AAAATAGGAAAAGCAATATTAGATGCTTG-AAAGCCCTTCAATCTTTGTGGTGTTGAA-T-TATT
128 AAAATAGGAAAAACAATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATT
* *
14596 TATTTTT-TCAGATTATTGTGGCAAAAAATTAAGGAAAAATTTGTT-GGGTCATTTTTTTGTAAA
193 TATTTTTATAAGA--ATTGTGGCAAAAAATTGAGGAAAAATTT-TTCGGGT-ATTTTTTTGTAAA
* *
14659 ATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACATTCCGGGGCCCCGA
254 ATTTTAGCCGAAATCGT-TACTAACCATCACGGTTTTTGGCTAAAAAC-CGTTCCGGGGCCCCGA
* * *
14724 CTCAGTTTTGCCTGATTTTTGGCGCCCAGACTCCATGAAGTATCTATATTCATCTAACCAAATCC
317 CTCAGTTTTGCTTGATTTTTGGCGCCCAAACTCCATGAAATATCTATATTCATCTAACCAAATCC
* *
14789 AGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATCA-AA
382 -GGCCACATTGGATTTAAGGAATTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAA
* * *
14853 ATTAATTCAGAAAAAATAGGAAAAGCAATATTAGATGGTTAAAAAGCCCTTCAATCTTTTTGGTG
446 ATTAATTCAGAAAAAATAGGAAAAGCGATATTAGATGCTCAAAAAGCCCTTCAATCTTTTTGGTG
* * * * *
14918 TTGAATTATATATTTTTTCTGATTATTGTGCCCGAAAATTGAGGAAAAATATTTGGGGT-ACTTT
511 TTGAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATATTTCGGGTCA-TTT
* * * * *
14982 TTTGCAAAA-TTCATCCGAAATCATTTACAAACCATCACGGTTTTTGGCTAAAAACACGTTCCGG
575 TTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGG
*
15046 GG-CTCCAACTCAGTTTTGCTTGA
640 GGCCT-CGACTCAGTTTTGCTTGA
* * * * * * *
15069 CTTTTGGCACCCAGAGTCCATGAAATATCTATATTAATCTAAGCGAATCTTGGCCACATTTGATT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGATT
* *
15134 TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATCTAATGAGAAATTAATTCAGAAAAA
66 TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATTTAATCAGAAATTAATTCAGAAAAA
* * *
15199 ATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATGTTTTTGGCGTTGAATTATATTTAT
131 ATAGGAAAAACAATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATTTAT
* * * * * * ***
15264 TTTTATGAGAATTGTGGTAAAAAATTGGGGAAATATTTTTCGGATTTTTTTTTTGCGTAATTTTA
196 TTTTATAAGAATTGTGGCAAAAAATTGAGGAAAAATTTTTCGG-GTATTTTTTTGTAAAATTTTA
*
15329 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCCGACTCAGT
260 GCCGAAATCGT-TACTAACCATCACGGTTTTTGGCTAAAAAC-CGTTCCGGGGCCCCGACTCAGT
* * * *
15394 TTTGCTTGATTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACTAAATCTTGGCCG
323 TTTGCTTGATTTTTGGCGCCCAAACTCCATGAAATATCTATATTCATCTAACCAAATC-CGGCCA
* ** *
15459 CATTGGTTTTAAGGAATTGTTTTCGCGAGCATCTGAATCTTGTTTCGATTTAATAAGAAATTAAT
387 CATTGGATTTAAGGAATTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAAT
* * *
15524 TTAGAAAAAATAGG--AAGCGATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTAGTGTTGAAT
452 TCAGAAAAAATAGGAAAAGCGATATTAGATGCTCAAAAAGCCCTTCAATCTTTTTGGTGTTGAAT
* *
15587 TATATA-TTTTTATAAGTATTGTGGCCAAAAATTGAGGAAAAA-ATTTTCGGGTCATTTTCTGCA
517 TATATATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATA-TTTCGGGTCATTTTTTGCA
* * * *
15650 AAATTTTAGCCGAAATTGTATACTAACCATCACCGTTTTTAGCTAAAAACACGTTCCAGGGCCTC
581 AAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCTC
*
15715 GACTCCGTTTTGCTTGA
646 GACTCAGTTTTGCTTGA
* * * * *
15732 TTTTTTGCGGCCAGACTCCATGAATTATCTATATTCCTCTTACCGAATCTCGGCCACATTGGATT
1 TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGATT
* * * * *
15797 TAAGGATTTATTTTTACAAGCATCCGAATAATGTTTC-AGTTTAATCAGAAATTAATTCAGAAAA
66 TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGA-TTTAATCAGAAATTAATTCAGAAAA
* * * * * *
15861 AATAGGAAAAACGATATTATATGCTTGAAAAGCCTTTCAATCTTTTTGCCGTTTGAATTATATAT
130 AATAGGAAAAACAATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTGGCG-TTGAATTATATTT
* *
15926 ATTTTTATTAAAAATTGTGGTC-AAAAATTGAGGAAATATTTTTCG
194 ATTTTTA-TAAGAATTGTGG-CAAAAAATTGAGGAAAAATTTTTCG
15971 TCACTGGAGT
Statistics
Matches: 1338, Mismatches: 184, Indels: 76
0.84 0.12 0.05
Matches are distributed among these distances:
655 2 0.00
656 4 0.00
657 36 0.03
658 73 0.05
659 106 0.08
660 2 0.00
661 153 0.11
662 162 0.12
663 499 0.37
664 232 0.17
665 65 0.05
666 4 0.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (662 bp):
TTTTTGGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCTCGGCCACATTGGATT
TAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATTTAATCAGAAATTAATTCAGAAAAA
ATAGGAAAAACAATATTAGATGCTCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATTTAT
TTTTATAAGAATTGTGGCAAAAAATTGAGGAAAAATTTTTCGGGTATTTTTTTGTAAAATTTTAG
CCGAAATCGTTACTAACCATCACGGTTTTTGGCTAAAAACCGTTCCGGGGCCCCGACTCAGTTTT
GCTTGATTTTTGGCGCCCAAACTCCATGAAATATCTATATTCATCTAACCAAATCCGGCCACATT
GGATTTAAGGAATTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAATTCAG
AAAAAATAGGAAAAGCGATATTAGATGCTCAAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATA
TATTTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATATTTCGGGTCATTTTTTGCAAAATT
TTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACGTTCCGGGGCCTCGACTC
AGTTTTGCTTGA
Found at i:15701 original size:993 final size:988
Alignment explanation
Indices: 13749--15970 Score: 2980
Period size: 993 Copynumber: 2.2 Consensus size: 988
13739 AATCATACTG
* * * * ** *
13749 TTTTTTGCGCCCAGAGTCCATGAAATATCTATATTCATCTAGCTGAATCTTGGCCGTATTGGTTT
1 TTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATC-CGGCCACATTGGATT
* ** * *
13814 TAAGGAATTGTTCCTACGAGCATCTGAATCATGTTTCTATTTAATAAGAAATTAATTTAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTC-ATTTAATCAGAAATTAATTCAGAAAAA
* * * *
13879 AAAGGAAGAGCGATATTAGAAT-ATCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATA-T
129 ATAGGAAAAGCGATATTAG-ATGATTGAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATT
* * * * *
13942 TTTTATAAGTATTGTGGCCAAAAATTGCGGAAAAAATTTTCGGGTCATTTTCTGTAAATTTTTAG
193 TTTTATAAGTATTGTGCCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTCTGCAAATATTCAG
* *
14007 CCAAAATCGTGTACCATCACGGTTTTTGGCTAAAAACCTGTTCCAAGGCCCCGACTCAGTTTTGC
258 CCAAAATCATGTACCATCACGGTTTTTGGCTAAAAACCTGTTCCAAGGCCCCAACTCAGTTTTGC
* ** *
14072 TTGACTTTTTGCGGCCAAACTCCATGAAATATCTATATTAATCTAATCGAATCTCGGCCACATTG
323 TTGACTTTTGGCACCCAAACTCCATGAAATATCTATATTAATCTAAGCGAATCTCGGCCACATTG
* *
14137 GATTTAAGGAATTGCTTTTACGAGCATCTGAATCATGTTTCGATTTAATAAGAAATTAATTCAGA
388 GATTTAAGGAATTGCTTTTACGAGCAACTGAATCATGTTTCGATCTAATAAGAAATTAATTCAGA
* * *
14202 AAAATAGGAAAAACGATATTAGATGCTCAAAAAGCCCTTTAATCTTTTTGACGTTGAATTATATA
453 AAAATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATCTTTTTGACGTTGAATTATATA
14267 TATTTTTATGAGAATTGTGGTAAAAAATTGAGCAAATAATTTTTGGATCTTTTTTTGCAAAATTT
518 TATTTTTATGAGAATTGTGGTAAAAAATTGAGCAAATAATTTTTGGATCTTTTTTTGCAAAATTT
* * *
14332 TAGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCTCGATTCA
583 TAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGACTCA
* * *
14397 GTTTTACTTGATTTTTGGCGCCCATACTCCATGAAATATCTATATTCATCTAACCGAATCTCGTC
648 GTTTTACTTGATTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACCAAATCTCGGC
* * * ** *
14462 CGCATTGGTTTCAATGATTTTTTTTTTCGAGAATCTCAATCATGTTTCGATTAATCAATAATTAA
713 CGCATTGGTTTCAAGGAATTGTTTTCGCGAGAATCTCAATCATGTTTCGATTAATCAAAAATTAA
* *
14527 TTCAGAAAAAATAGGAAAAGCAATATTAGATGCTTGAAAGCCCTTCAATCTTTGTGGTGTTGAAT
778 TTCAGAAAAAATAGG-AAAGCAATATTAGATGCTCGAAAGCCCTTCAATCTTTGTAGTGTTGAAT
* * * * *
14592 TATTTATTTTTTCAGATTATTGTGGCAAAAAATTAAGGAAAAATTTGTTGGGTCATTTTTTTGTA
842 TATATATTTTTTCAGAGTATTGTGGCAAAAAATTAAGGAAAAATTTGTCGGGTCATTTTTCTGCA
* * * *
14657 AAATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGGCTAAAAACACATTCCGGGGCCCC
907 AAATTTTAGCCGAAATCGTATACTAACCATCACCGTTTTTAGCTAAAAACACATTCCAGGGCCCC
14722 GACTCAGTTTTGCCTGA
972 GACTCAGTTTTGCCTGA
* * *
14739 TTTTTGGCGCCCAGACTCCATGAAGTATCTATATTCATCTAACCAAATCCAGGCCACATTGGATT
1 TTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCC-GGCCACATTGGATT
14804 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGATTTAATCA-AAATTAATTCAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTC-ATTTAATCAGAAATTAATTCAGAAAAA
* * *
14868 ATAGGAAAAGCAATATTAGATGGTTAAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTT
129 ATAGGAAAAGCGATATTAGATGATTGAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTT
* * * * * *
14933 TTTCTGATTATTGTGCCCGAAAATTGAGG-AAAAATATTTGGGGT-ACTTTTTTGCAAA-ATTCA
194 TTTATAAGTATTGTGCCCAAAAATTGAGGAAAAAAT-TTTCGGGTCA-TTTTCTGCAAATATTCA
* * * ** *
14995 TCCGAAATCATTTACAAACCATCACGGTTTTTGGCTAAAAACAC-GTTCCGGGGCTCCAACTCAG
257 GCCAAAATCATGT----ACCATCACGGTTTTTGGCTAAAAAC-CTGTTCCAAGGCCCCAACTCAG
* * *
15059 TTTTGCTTGACTTTTGGCACCCAGAGTCCATGAAATATCTATATTAATCTAAGCGAATCTTGGCC
317 TTTTGCTTGACTTTTGGCACCCAAACTCCATGAAATATCTATATTAATCTAAGCGAATCTCGGCC
* * * *
15124 ACATTTGATTTAAGGATTTGTTTTTACGAGCAACTGAATCATGTTTCGATCTAATGAGAAATTAA
382 ACATTGGATTTAAGGAATTGCTTTTACGAGCAACTGAATCATGTTTCGATCTAATAAGAAATTAA
* *
15189 TTCAGAAAAAATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATGTTTTTGGCGTTGAA
447 TTCAG-AAAAATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATCTTTTTGACGTTGAA
* * * *
15254 TTATATTTATTTTTATGAGAATTGTGGTAAAAAATTGGGGAAAT-ATTTTTCGGATTTTTTTTTT
511 TTATATATATTTTTATGAGAATTGTGGTAAAAAATTGAGCAAATAATTTTT-GGA-TCTTTTTTT
** *
15318 GCGTAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGC
574 GCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGC
* *
15383 CCCGACTCAGTTTTGCTTGATTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACTA
639 CCCGACTCAGTTTTACTTGATTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACCA
* * * * *
15448 AATCTTGGCCGCATTGGTTTTAAGGAATTGTTTTCGCGAGCATCTGAATCTTGTTTCGATTTAAT
704 AATCTCGGCCGCATTGGTTTCAAGGAATTGTTTTCGCGAGAATCTCAATCATGTTTCGA-TTAAT
* * *
15513 -AAGAAATTAATTTAGAAAAAATAGG-AAGCGATATTAGATGCTCGAAAAGCCCTTCAATCTTTT
768 CAA-AAATTAATTCAGAAAAAATAGGAAAGCAATATTAGATGCTCG-AAAGCCCTTCAATCTTTG
* *
15576 TAGTGTTGAATTATATATTTTTAT-A-AGTATTGTGGCCAAAAATTGAGGAAAAAATTT-TCGGG
831 TAGTGTTGAATTATATATTTTT-TCAGAGTATTGTGGCAAAAAATTAAGG-AAAAATTTGTCGGG
*
15638 TCA-TTTTCTGCAAAATTTTAGCCGAAATTGTATACTAACCATCACCGTTTTTAGCTAAAAACAC
894 TCATTTTTCTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACCGTTTTTAGCTAAAAACAC
* * * *
15702 GTTCCAGGGCCTCGACTCCGTTTTGCTTGA
959 ATTCCAGGGCCCCGACTCAGTTTTGCCTGA
* * * *
15732 TTTTTTGCGGCCAGACTCCATGAATTATCTATATTCCTCTTACCGAATCTCGGCCACATTGGATT
1 TTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATC-CGGCCACATTGGATT
* * * *
15797 TAAGGATTTATTTTTACAAGCATCCGAATAATGTTTCAGTTTAATCAGAAATTAATTCAGAAAAA
65 TAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCA-TTTAATCAGAAATTAATTCAGAAAAA
* * * *
15862 ATAGGAAAAACGATATTATATGCTTGAAAAGCCTTTCAATCTTTTTGCCGT-TTGAATTATATAT
129 ATAGGAAAAGCGATATTAGATGATTGAAAAGCCCTTCAATCTTTTTG--GTGTTGAATTATATAT
** ** * *
15926 ATTTTTATTAAAAATTGTGGTCAAAAATTGAGGAAATATTTTTCG
192 -TTTTTA-TAAGTATTGTGCCCAAAAATTGAGGAAAAAATTTTCG
15971 TCACTGGAGT
Statistics
Matches: 1073, Mismatches: 133, Indels: 45
0.86 0.11 0.04
Matches are distributed among these distances:
988 2 0.00
989 87 0.08
990 137 0.13
992 1 0.00
993 347 0.32
994 202 0.19
995 237 0.22
996 33 0.03
997 23 0.02
998 4 0.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (988 bp):
TTTTTTGCGCCCAGACTCCATGAAATATCTATATTCATCTAACCGAATCCGGCCACATTGGATTT
AAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCATTTAATCAGAAATTAATTCAGAAAAAAT
AGGAAAAGCGATATTAGATGATTGAAAAGCCCTTCAATCTTTTTGGTGTTGAATTATATATTTTT
TATAAGTATTGTGCCCAAAAATTGAGGAAAAAATTTTCGGGTCATTTTCTGCAAATATTCAGCCA
AAATCATGTACCATCACGGTTTTTGGCTAAAAACCTGTTCCAAGGCCCCAACTCAGTTTTGCTTG
ACTTTTGGCACCCAAACTCCATGAAATATCTATATTAATCTAAGCGAATCTCGGCCACATTGGAT
TTAAGGAATTGCTTTTACGAGCAACTGAATCATGTTTCGATCTAATAAGAAATTAATTCAGAAAA
ATAGGAAAAACAATATTAGATGCTCAAAAAACCCTTCAATCTTTTTGACGTTGAATTATATATAT
TTTTATGAGAATTGTGGTAAAAAATTGAGCAAATAATTTTTGGATCTTTTTTTGCAAAATTTTAG
CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGACTCAGTT
TTACTTGATTTTTGGCGCCCACACTCCATGAAATATCTATATTCATCTAACCAAATCTCGGCCGC
ATTGGTTTCAAGGAATTGTTTTCGCGAGAATCTCAATCATGTTTCGATTAATCAAAAATTAATTC
AGAAAAAATAGGAAAGCAATATTAGATGCTCGAAAGCCCTTCAATCTTTGTAGTGTTGAATTATA
TATTTTTTCAGAGTATTGTGGCAAAAAATTAAGGAAAAATTTGTCGGGTCATTTTTCTGCAAAAT
TTTAGCCGAAATCGTATACTAACCATCACCGTTTTTAGCTAAAAACACATTCCAGGGCCCCGACT
CAGTTTTGCCTGA
Found at i:18173 original size:62 final size:62
Alignment explanation
Indices: 18097--18372 Score: 489
Period size: 62 Copynumber: 4.4 Consensus size: 62
18087 ACACGACAGA
18097 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
18159 CACGAAGGTACACGAGAAGACAGACAGGAAGACGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAG
1 CACGAAGGTACACGAGAAGACAG--AGGAAG--GAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAG
18224 G
62 G
*
18225 CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
*
18287 CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
1 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
*
18349 CACGAAGGTACACAAGAAGACAGA
1 CACGAAGGTACACGAGAAGACAGA
18373 CACGAAGGTA
Statistics
Matches: 207, Mismatches: 3, Indels: 8
0.95 0.01 0.04
Matches are distributed among these distances:
62 140 0.68
64 12 0.06
66 55 0.27
ACGTcount: A:0.36, C:0.24, G:0.38, T:0.03
Consensus pattern (62 bp):
CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
Found at i:18375 original size:128 final size:126
Alignment explanation
Indices: 18097--18370 Score: 498
Period size: 128 Copynumber: 2.2 Consensus size: 126
18087 ACACGACAGA
*
18097 CACGAAGGTACACGAGAAGACAGAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGGCAC
1 CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGGCAC
18162 GAAGGTACACGAGAAGACAGACAGGAAGACGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
66 GAAGGTACACGAGAAGACA-ACAGGAAGA-GAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
18225 CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGGCAC
1 CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGGCAC
18290 GAAGGTACACGAGAAGAC-ACAGGAAG-GAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
66 GAAGGTACACGAGAAGACAACAGGAAGAGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
*
18349 CACGAAGGTACACAAGAAGACA
1 CACGAAGGTACACGAGAAGACA
18371 GACACGAAGG
Statistics
Matches: 144, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
124 54 0.38
126 8 0.06
128 82 0.57
ACGTcount: A:0.35, C:0.24, G:0.38, T:0.03
Consensus pattern (126 bp):
CACGAAGGTACACGAGAAGACACAGGAAGGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGGCAC
GAAGGTACACGAGAAGACAACAGGAAGAGAAGAGGCCTCCGCAGGAGGCGAGGCCAGCAGG
Found at i:18381 original size:24 final size:24
Alignment explanation
Indices: 18349--18462 Score: 87
Period size: 24 Copynumber: 4.9 Consensus size: 24
18339 GGCCAGCAGG
18349 CACGAAGGTACACAAGAAGACAGA
1 CACGAAGGTACACAAGAAGACAGA
*
18373 CACGAAGGTACACGAGAAGACAG-
1 CACGAAGGTACACAAGAAGACAGA
* ** * *
18396 -AGGAAGACAGACACGAAG---GTA
1 CACGAAGGTACACAAGAAGACAG-A
* * *
18417 CACGAGAAG-ACAGAGGAAGACAGA
1 CACGA-AGGTACACAAGAAGACAGA
18441 CACGAAGGTACACAAGAAGACA
1 CACGAAGGTACACAAGAAGACA
18463 CAGTGGTGCT
Statistics
Matches: 66, Mismatches: 16, Indels: 16
0.67 0.16 0.16
Matches are distributed among these distances:
19 1 0.02
22 22 0.33
23 3 0.05
24 39 0.59
25 1 0.02
ACGTcount: A:0.48, C:0.19, G:0.29, T:0.04
Consensus pattern (24 bp):
CACGAAGGTACACAAGAAGACAGA
Found at i:18402 original size:34 final size:34
Alignment explanation
Indices: 18364--18462 Score: 189
Period size: 34 Copynumber: 2.9 Consensus size: 34
18354 AGGTACACAA
18364 GAAGACAGACACGAAGGTACACGAGAAGACAGAG
1 GAAGACAGACACGAAGGTACACGAGAAGACAGAG
18398 GAAGACAGACACGAAGGTACACGAGAAGACAGAG
1 GAAGACAGACACGAAGGTACACGAGAAGACAGAG
*
18432 GAAGACAGACACGAAGGTACACAAGAAGACA
1 GAAGACAGACACGAAGGTACACGAGAAGACA
18463 CAGTGGTGCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.48, C:0.18, G:0.30, T:0.03
Consensus pattern (34 bp):
GAAGACAGACACGAAGGTACACGAGAAGACAGAG
Found at i:18583 original size:2 final size:2
Alignment explanation
Indices: 18578--18663 Score: 172
Period size: 2 Copynumber: 43.0 Consensus size: 2
18568 ACACACACAG
18578 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
18620 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
18662 GA
1 GA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 84 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Done.