Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015458.1 Corchorus olitorius cultivar O-4 contig15491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118685

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4684--4717
2
17.5
2
93
6
61
50
0
0
50
1.00
16977--17057
39
2.0
40
92
2
137
50
8
3
37
1.51
17048--17094
25
1.9
24
95
4
85
34
6
4
55
1.45
17191--17560
203
1.8
201
95
3
672
35
11
8
44
1.72
26754--26799
19
2.4
20
79
17
53
4
8
21
65
1.38
40713--40853
61
2.3
61
93
0
237
24
22
19
32
1.97
58765--58810
23
2.0
23
83
8
58
43
6
10
39
1.66
60259--60391
68
1.9
69
95
1
241
30
8
15
45
1.76
61385--61426
19
2.2
19
100
0
84
0
35
9
54
1.33
61385--61424
9
4.3
9
84
6
53
0
35
10
55
1.34
91310--91376
27
2.5
27
97
0
125
41
13
11
32
1.81
98226--98350
61
2.0
61
100
0
250
41
8
23
27
1.82
99584--99609
2
13.0
2
100
0
52
50
0
0
50
1.00
104776--104811
15
2.4
15
100
0
72
41
16
27
13
1.87
112251--113504
333
3.8
330
81
4
1326
36
15
15
32
1.89
114456--116554
333
6.4
330
86
3
2772
36
16
15
32
1.89
114446--116554
664
3.2
661
90
2
3195
36
15
15
32
1.89
116615--118682
333
6.2
330
85
3
2627
36
16
14
32
1.89

Tables:   1

The End!