Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015461.1 Corchorus olitorius cultivar O-4 contig15494, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66716
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Found at i:1093 original size:332 final size:334
Alignment explanation
Indices: 1--2328 Score: 3425
Period size: 332 Copynumber: 7.0 Consensus size: 334
*
1 TTCGGCTAAAATTTTTGAAAAAAACTGATCCGAAAA-TTTTTCCTCCATTTTTTGCCACAATACT
1 TTCGGCTAAAATTTTTG-AAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACT
* * * *
65 CAC-AAAAATATATAATTCATTGCCAAAAAGACTGAAGGGCTTTTTACGCTTCTAATATCGTTTT
65 CACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTT
* * ** *
129 TC-AAAATTTTTCAAAATTAATTTTTAGGTAAATC-AGAACATGATTCAGATGCTCGTAAAAACA
130 TCAAAAATTTTTCCAAATTAATTTCTAACTAAATCGA-AACATGATTCAGATGCTCGCAAAAACA
* * *
192 AATCCTTAAACCCATTGCGACTGAGATTTAGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGC
194 AATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGC
* *
257 ACTAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGA----
259 ACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGT
318 T-GTACACGAT
324 TAGTACACGAT
328 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * *
393 ACAAAAAATATATAATTCAATGCCAGAATGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTT
66 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTTT
*
458 C-AAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
522 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATAATATTTCAAGGAGTCTTGG
196 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAG---ATATTTCAAGGAGTCTTGG
* * * *
587 AACCAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTAAGGCAAAAATCATGATGG
258 CACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGG
652 TTAGTACACGAT
323 TTAGTACACGAT
* *
664 TTCTGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTATCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * *
729 ACAAAAAATATATAATTCAATGCCAGAAAGATTGAAGGACTTTTCAAGCATCTAATATC-ATTTT
66 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTTT
** *
793 CAAAAAAATTTCCAAATTAATTTCTAACTAAATCGAAATATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
* *
858 TCCTTAAACCCATTGCGGCTGATATTTGGTTAGATGAATAAAGATATTTCAAGGAGTC-TGGCAC
196 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
* * *
922 CAGAAATCATGCAAAACTGAGCCGGGGCTCCATAGCGCATTTTTAGCCAAAAATCATAATGGTTA
261 CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
987 GTACACGAT
326 GTACACGAT
* *
996 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTTCTTTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * *
1061 ACAAAAAATATATAATTCAATGCAAAAAAGATTGAAGGGCTTTTTAGGCTTCTAATATCGTTTTT
66 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTTT
* * * * *
1126 CAAAAA-TTTTCCAAATTAATTTTTAACTAAATCGGAACATGAATCACATGTTCGCAAAAACAAA
131 CAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
*
1190 TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTT-GCAC
196 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
*
1254 CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAATTCATGATGGTTA
261 CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
1319 GTACACGAT
326 GTACACGAT
1328 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * *
1393 ACAAAAAATATATAATTCAATGCCAGAAAGATTGAAGGGCTTTCCAAGCTTCTAATATCATTTTT
66 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTTT
* *
1458 CAAAAAATTTTCCAAATTAATATCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
* *
1523 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAAATATTTCAAGGGGTCTTGGCAC
196 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
* * * ** * * *
1588 CAAAAATCATGCAAAGCTGAGCCGGAGACATAGAGCGCATTTTTATCCAAAAATCATGAGGGTTA
261 CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
1653 GTACACGAT
326 GTACACGAT
** * * * *
1662 TTTAGCTAAATTTTTTG-AAAAACTGACCCGAAAA-GTTTTCTTCAATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* *
1725 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAATGGCTTTTCACGCTTC-AATTATCGTTTT
66 ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAA-TATCGTTTT
** * *
1789 TCAAGATTTTTTTTCAAATTAATTTCTAACTAAATCGAAACATGATTTAGATGCTCGCAAAAACA
130 TCAA-AAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACA
* * * * *
1854 ATTTCTTAAATCCATTGGGGCTGAGATTTGGTTAGATGAATAAAGATATTTCTAGGAGTCTTCGC
194 AATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGC
* * * * * **
1919 ACTAAAAATTATGCAAAATTGAGCAGAGGCAACATAGCGCATTTTTAGCCAAAAATCATGATGGT
259 ACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGT
* *
1984 TAATACATGAT
324 TAGTACACGAT
** * *
1995 TTCGGCTAAAATTTTTGAAAAAAACTGACCCGAAGGTTTTTTACTCAATTTTTTGCCACAATACT
1 TTCGGCTAAAATTTTTG-AAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACT
* * * * * *
2060 CATAAAAAATTATATAATTCAGTGACAAAATA-ATTGAA-GGATTTTCAAGCTTCTAATATCCTC
65 CACAAAAAA-TATATAATTCAATGCCAAAA-AGATTGAAGGGCTTTTCAAGCTTCTAATATCGTT
* * *
2123 TTTCAAAATTTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCACAAAG
128 TTTCAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAAC
* * * * *
2188 AAAGCTTTAAATCTATTACGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGC
193 AAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
* * * *
2253 CACCAAAAATCATGGAAAACTGAGCCGAGGCGCCATAGTGCATTTTTAGCCAAAAATCATGATGG
258 CACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGG
2318 TTAGTACACGA
323 TTAGTACACGA
2329 AAATCTTTTT
Statistics
Matches: 1812, Mismatches: 165, Indels: 40
0.90 0.08 0.02
Matches are distributed among these distances:
326 17 0.01
327 48 0.03
328 155 0.09
329 1 0.00
331 79 0.04
332 583 0.32
333 339 0.19
334 83 0.05
335 196 0.11
336 284 0.16
337 26 0.01
338 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (334 bp):
TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
ACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCGTTTTT
CAAAAATTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
GTACACGAT
Found at i:2259 original size:668 final size:664
Alignment explanation
Indices: 1--9432 Score: 11374
Period size: 668 Copynumber: 14.2 Consensus size: 664
*
1 TTCGGCTAAAATTTTTGAAAAAAACTGATCCGAAAA-TTTTTCCTCCATTTTTTGCCACAATACT
1 TTCGGCTAAAATTTTTG-AAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACT
* * * * * *
65 CAC-AAAAATATATAATTCATTGCCA-AAAAGACTGAAGGGCTTTTTACGCTTCTAATATCGTTT
65 CACAAAAAATATATAATTCAATGCCAGAAAA-ATTGAAGGGATTTTCAAGCTTCTAATATCATTT
* * * ** *
128 TTC-AAAATTTTTCAAAATTAATTTTTAGGTAAATC-AGAACATGATTCAGATGCTCGTAAAAAC
129 TTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGA-AACATGATTCAGATGCTCGCAAAAAC
* *
191 AAATCCTTAAACCCATTGCGACTGAGATTTAGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
193 AAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
* * **
256 CACTAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGA---
258 CACCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGG
*
318 -T-GTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTT
323 TTAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTT-CTTCATTTTTT
* *
381 GCCACAATACTCACAAAAAATATATAATTCAATGCCAGAATGATTGAAGGGCTTTTCACGCTTCT
387 GCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCT
446 AATATCGTTTTTCAAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTC
452 AATATCGTTTTTCAAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTC
511 GCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATAATATTTCA
517 GCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAG---ATATTTCA
* * * *
576 AGGAGTCTTGGAACCAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTAAGGCAAA
579 AGGAGTCTT-GCACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAAA
641 AATCATGATGGTTAGTACACGAT
642 AATCATGATGGTTAGTACACGAT
* *
664 TTCTGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTATCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* *
729 ACAAAAAATATATAATTCAATGCCAGAAAGATTGAA-GGACTTTTCAAGCATCTAATATCA-TTT
66 ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGA-TTTTCAAGCTTCTAATATCATTTT
* *
792 TCAAAAAAATTTCCAAATTAATTTCTAACTAAATCGAAATATGATTCAGATGCTCGCAAAAACAA
130 TCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAA
*
857 ATCCTTAAACCCATTGCGGCTGATATTTGGTTAGATGAATAAAGATATTTCAAGGAGTC-TGGCA
195 ATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCA
* * * *
921 CCAGAAATCATGCAAAACTGAGCCGGGGCTC-CATAGCGCATTTTTAGCCAAAAATCATAATGGT
260 CCAAAAATCATGCAAAACTGAGCCAGGGC-CATATAGCGCATTTTTAGCCAAAAATCATGATGGT
*
985 TAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTTCTTTTTTTG
324 TAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTT-CTTCATTTTTTG
* * *
1050 CCACAATACTCACAAAAAATATATAATTCAATGCAAAAAAGATTGAAGGGCTTTTTAGGCTTCTA
388 CCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTA
* * * * *
1115 ATATCGTTTTTCAAAAATTTTCCAAATTAATTTTTAACTAAATCGGAACATGAATCACATGTTCG
453 ATATCGTTTTTCAAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTCG
*
1180 CAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGA
518 CAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGA
* *
1245 GTCTTGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAATTCA
583 GTCTTGCACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAAAAATCA
1310 TGATGGTTAGTACACGAT
647 TGATGGTTAGTACACGAT
1328 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * *
1393 ACAAAAAATATATAATTCAATGCCAGAAAGATTGAAGGGCTTTCCAAGCTTCTAATATCATTTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCATTTTT
*
1458 CAAAAAATTTTCCAAATTAATATCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
* * *
1523 TCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAAATATTTCAAGGGGTCTTGGCAC
196 TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
* * * * *
1588 CAAAAATCATGCAAAGCTGAGCC-GGAGACATAGAGCGCATTTTTATCCAAAAATCATGAGGGTT
261 CAAAAATCATGCAAAACTGAGCCAGG-GCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTT
** * *
1652 AGTACACGATTTTAGCTAAATTTTTTG-AAAAACTGACCCGAAAA-GTTTTCTTCAATTTTTTGC
325 AGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCTTC-ATTTTTTGC
*
1715 CACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAATGGCTTTTCACGCTTC-AA
389 CACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
* * * *
1779 TTATCGTTTTTCAAGATTTTTTTTCAAATTAATTTCTAACTAAATCGAAACATGATTTAGATGCT
454 -TATCGTTTTTCAA-A-ATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCT
* * * *
1844 CGCAAAAACAATTTCTTAAATCCATTGGGGCTGAGATTTGGTTAGATGAATAAAGATATTTCTAG
516 CGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAG
* * * **
1909 GAGTCTTCGCACTAAAAATTATGCAAAATTGAGCAGAGGCAACATAGCGCATTTTTAGCCAAAAA
581 GAGTCTT-GCACCAAAAATCATGCAAAACTGAGCAG-GGCCCCATAGCGCATTTTTAGCCAAAAA
* *
1974 TCATGATGGTTAATACATGAT
644 TCATGATGGTTAGTACACGAT
** * *
1995 TTCGGCTAAAATTTTTGAAAAAAACTGACCCGAAGGTTTTTTACTCAATTTTTTGCCACAATACT
1 TTCGGCTAAAATTTTTG-AAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACT
* * * * *
2060 CATAAAAAATTATATAATTCAGTGACA-AAATAATTGAA-GGATTTTCAAGCTTCTAATATCCTC
65 CACAAAAAA-TATATAATTCAATGCCAGAAA-AATTGAAGGGATTTTCAAGCTTCTAATATCATT
** * *
2123 TTTCAAAATTTTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCACAAAG
128 TTTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAAC
* * * * * *
2188 AAAGCTTTAAATCTATTACGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGC
193 AAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
* *
2253 CACCAAAAATCATGGAAAACTGAGCCGAGGCGCC--ATAGTGCATTTTTAGCCAAAAATCATGAT
258 CACCAAAAATCATGCAAAACTGAGCC-AGG-GCCATATAGCGCATTTTTAGCCAAAAATCATGAT
2316 GGTTAGT--AC-A---C-G--AAAATCTTTT--------T---CC----------TC--CATTTT
321 GGTTAGTACACGATTTCGGCTAAAAT-TTTTGAAAAAACTGACCCGAAAATTTTTTCTTCATTTT
* * *
2349 TTGCCACAATACTCACAAATAATATATAATTCAATGCCAGAAAGATTGAAGGGCTTTTCAAGCTT
385 TTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTT
* * * *
2414 CTAATATCATTTTTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTTAGATG
450 CTAATATCGTTTTTC-AAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATG
* * *
2479 CTCGCAAAAACAAATCCTTAAATCAATTGTGGCTGAGATTTGGTTACATGAATAAAGATATTTCA
514 CTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCA
* * * *
2544 A-GATATCTTGGCACTAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTTAGGCAA
579 AGGA-GTCTT-GCACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAA
*
2608 AAATCATGATGGTTAATACACGAT
641 AAATCATGATGGTTAGTACACGAT
* ** *
2632 TTCGGCTAAAATTTTTTAAAAAACTGACCCGAAAATTTTTTCCTTTATTTTTTGCCACAAAACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * * ** *
2697 ACAAAAAATATATAATTCAATGCCACAAAGATTGAAGGGCTTTTTACGCTTGAAATATCGTTTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCATTTTT
** * * * *
2762 CAAAATTTTTTCCAAATTAATTTTTAACTAAATCGGAATATGATTTAGATGCTCGCAAAAACAAA
131 CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
* * *
2827 TCCTTAAATCTATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTC-TGCACA
196 TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTG-GCA
* * * ** * *
2891 CCAAACATCATGCAAAACTGAGTCGGGGCCCCATAGCGCCTTTTT-GGCAAAAATCATGATGGTT
260 CCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTT
* * * *
2955 TGTACACGATTTCGGCTAAAACTTTTGAAAAAACTGACCCGAAAACTTTTTCCTCCATTTTTTGC
325 AGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAA-TTTTTTCTTCATTTTTTGC
* * *
3020 CATAATACTCACAAAAAATATATAATTCAATGCCAGAAAGATTGAAGGGCTTTTCAAGCTTCTAA
389 CACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
** *
3085 TATC-AATTTCAAAAATTTTTCCAAATTAATTTCTAACTAAATTC-AAACATGATTCAGATGCTC
454 TATCGTTTTTC-AAAATTTTTCCAAATTAATTTTTAACTAAA-TCGAAACATGATTCAGATGCTC
* * * * * * *
3148 GTAAAAACAAATCCTTATACCCATTGCGGCTTAGATTTGGTTGGATGAAAAAAAATATTTC---G
517 GCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGG
* * *
3210 AGTCTTGGCACTAAAAATCATGCAAAACTGAGCCTGGGCCCCATAGCGCATTTTTAGGCAAAAAT
582 AGTCTT-GCACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAAAAAT
3275 CATGATGGTTAGTACACGAT
645 CATGATGGTTAGTACACGAT
3295 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * *
3360 ACAAAAATTATATAATTCAATGCCAGAAAGAGTGAAGGGCTTCTCAAGCTTCTAATATCA-TTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCATTTTT
3424 CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
* *
3489 TCCTTATATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCA-
196 TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
* **
3553 CAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTT-
261 CAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
*
3617 -TACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCC
326 GTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTT-CTTCATTTTTTGCC
* * **
3681 ACAATACTCACAAAAAATATATAATTCAATGCCACAAAGATTGAAGGGCTTTTTACGCTTGAAAT
390 ACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAAT
* * *
3746 ATCGTTTTTCAAAATTTTTCCAGATTAATTTTTAACTAAATCGAAATATGATTCAGATGGTCGCA
455 ATCGTTTTTCAAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTCGCA
* * * *
3811 AAAACAAATCCTTAAACCCATTGCGGTTGAGATTTGGTTAGATGATTAAACATATTTCAAGGAGT
520 AAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGT
* * * *
3876 CTGGACACCAAAAATCATGCAAAACTGAGTCGGGGCCCCATAGCGCATTTGTAGGCAAAAATCAT
585 CTTG-CACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAAAAATCAT
3941 GA----T-G--CACGAT
648 GATGGTTAGTACACGAT
*
3951 TTCGACTAAAATTTTTGAAAAAACTGACCCGAAAA-TTTTTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * *
4015 AC-AAAACTGACCCGAAAATTCAATGCCAGAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCAT
66 ACAAAAAAT-A---TATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCAT
* *
4079 TTTTCAAAAAAATTTCCAAATTAATTTCTAACTAAATCGAAACATGATTTAGATGCTCGCAAAAA
127 TTTTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAA
* * * *
4144 CAAATCCTTAAATCAATTGTGGCTGAGATTTGGTTAAATGAATAAAGATATTTCAAGGAGTCTTG
192 CAAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTG
* * * ** *
4209 GCACCAAAAATTATGCAAAACTGAGTCGGGGCCCCATAGAGCATTTTTAGCCAAAAATCATGATG
257 GCACCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATG
* * *
4274 GTTAGTACACGATTTCGACTAAAATTTTTGAAAAAACTAACCCGAAAATTTTTTTCTCCATTTTT
322 GTTAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAA-TTTTTTCTTCATTTTT
* * * *
4339 TGCCACAATACTCCCAAAAAATATATAATTGAATGCCAAGAAGATTGAAGGGCTTTTCAAGCTTC
386 TGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTC
* * *
4404 TAATATCATTATTCAAAAAATTTTCCAAATTAATTTCTT-ACTAAATCGAAACATGATTCAGATG
451 TAATATCGTTTTTC-AAAATTTTTCCAAATTAATTT-TTAACTAAATCGAAACATGATTCAGATG
* *
4468 CTCGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATCAATAAAGATATTTTC
514 CTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATA-TTTC
* * * * * * *
4533 CAGGAGTCTTGGTACAAAAAATCATACAAAACTGAGCCGGAGTCCCATAGCGCATTTTTAGGCAA
578 AAGGAGTCTT-GCACCAAAAATCATGCAAAACTGAGCAGG-GCCCCATAGCGCATTTTTAGCCAA
*
4598 AAATCATGATGGTTAGTACACTAT
641 AAATCATGATGGTTAGTACACGAT
* * * * *
4622 TTCGACTAAAATTTTTGAAAAAACTGACCCGAAAGTTTTTTACTCAATTTTTTTCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * *
4687 ATAAAAATTATATAATTCAATGCCA-AAATAATTGAAGGG-TTTTCACGCTTCTAATATCGTCTT
66 ACAAAAAATATATAATTCAATGCCAGAAA-AATTGAAGGGATTTTCAAGCTTCTAATATCATTTT
** * * * * *
4750 TCAAAATTTTTTCCCAATTAATTTATAATTAAAAGT-GAAACTTGATTCAGATACTCGCAAAAAC
130 TCAAAAAATTTTCCAAATTAATTTCTAACT-AAA-TCGAAACATGATTCAGATGCTCGCAAAAAC
* *
4814 AAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGTTGAATAAAGATATTTCAAGGAGTCTTGG
193 AAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
* ** *
4879 CACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGGCAAAAATCATGATGG
258 CACCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGG
* *
4944 TTAGTACACTATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTTTTCCTCCATTT
323 TTAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAA---TTTTTT-CTTCATTT
* * * *
5009 TTTGCCACAATACTCAAAAAAAATATATAATTCAATGCCAGAAAGATTGTAGGGCTTTTCAAGCT
384 TTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCT
* * * *
5074 TCTAATATCATTTTTCAAAATTTTTTCAAAATTAATTTTTAACTAAATCTAAACATGATTCGGAT
449 TCTAATATCGTTTTTCAAAA-TTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGAT
* * *
5139 AG-TTGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGTATAAAGATATTT
513 -GCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTT
* * * * *
5203 CAAGGAGTCTTGACACCCAAAATCATGCAAAACTAAGTCGGGGCCCCATAGTGCATTTTTAGGCA
577 CAAGGAGTCTTG-CACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCA
* * *
5268 AAAATCATGATGGTAACATACAAGAT
640 AAAATCATGATGGTTA-GTACACGAT
* *
5294 TTCGGCTAAACTTTTTGAAAAAACTGACCCGAAAATTTATTCCTCCATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * * * ** *
5359 ACAAAAAATATATAATTCAATGCCACAAAGATTGAAGGGCTTTTTACGATTGAAATATCGTTTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCATTTTT
* *
5424 C--AAAA---T-----TT--TTTC--A--AAAT--TAATATGATTCAGATGCTCGCAAAAACAAA
131 CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
*
5471 TCCTTAAACCCATTGCGGCTGAGAGTTGGTTAGATGAATAAAGATATTTCAAGGAGTC-TGGACA
196 TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG-CA
* * * ** * *
5535 CCAGAAATCATGCATAACTGAGCCGGGGCCCCATAGCGCAATTTTAGCCAAAAATCATGATAGTT
260 CCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTT
* * * * * * *
5600 AGTACACAATTTCGGCTATAATTTTTGAAAATACTGACCCAAAAATTTATTCCTCCATTTTTTAC
325 AGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTT-TTTCTTCATTTTTTGC
* * * **
5665 CACAATAATCACAAAAAATATATAATTCAATGCCACAAAGATTGAAGGGCTTTTTACGCTTGAAA
389 CACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAA
* * * * *
5730 TATTGTTTTTAAAAATTTTTTCCAGATTAATTTTTAACTAAATCGAAATATGATTCAGATACTCG
454 TATCGTTTTTCAAAA-TTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTCG
*
5795 CAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGA
518 CAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGA
* * * * * *
5860 GTCTTGGCACCAAAAATCATGCATAACTGAACCGGGGCCCCATTGTGCATTTTTAGGCAAAAATC
583 GTCTT-GCACCAAAAATCATGCAAAACTG-AGCAGGGCCCCATAGCGCATTTTTAGCCAAAAATC
5925 ATGATGGTTAGTACACGAT
646 ATGATGGTTAGTACACGAT
*
5944 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCTATTTTTTGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * *
6009 ACAAAAGAATATATAATTCAATGCCA-AAAAGATTGAAGGGTTTTTCACGCTTCTAATATCGTTT
66 ACAAAA-AATATATAATTCAATGCCAGAAAA-ATTGAAGGGATTTTCAAGCTTCTAATATCATTT
*** * * * **
6073 TTCAAATTTTTTTCCAAATTAATTTCTAATTAAATCGAAACATGATTTAGGTGCTCATAAAAACA
129 TTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACA
* * * * * * * *
6138 AAACCTTGAAGCCAATGGGGTTGAGATTTGGTTAGATGAATATAGAAATTTCAAGGAGTCTTGGC
194 AATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGC
* * * * * *
6203 ACCAAAAATCATTCAAAACTAAGCCGGGGCTC-CATAGCGCATGTTTAGCCAAAAAATCATGATA
259 ACCAAAAATCATGCAAAACTGAGCCAGGGC-CATATAGCGCATTTTTAGCC-AAAAATCATGATG
* * * * *
6267 GTTATTACACGATTTCGGCTAAAATTTTTG-AAAAACTGAGCTGAAAAATTTTTTCCTCAATTTT
322 GTTAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCG-AAAATTTTTTCTTCATTTTT
* * * * *
6331 TGACCACAATACTCATAGAAAATATATAATTCAATGCCGAAAAGATTGAAGGGCTTTCCGCGCTT
386 TG-CCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTT
* * * * * *
6396 CTAATTTCATTTTTCAAAATTTTTTTCCAAATTAATTTCTAATTCAATTGAAACATGATTCAGAT
450 CTAATATCGTTTTTCAAAA--TTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGAT
* * * *
6461 GCTTGCAAAAAGAAATCCTTAAATCCATTGCGGCTGAGGTTTGGATAGATGAATAAAGATATTTC
513 GCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTC
* * * *
6526 AAGGAGTCTTGGCACCAAAAACCATGCAAAACTGAGCTGGGGCCCCAGAACGCATTTTTAGCCAA
578 AAGGAGTCTT-GCACCAAAAATCATGCAAAACTGAGC-AGGGCCCCATAGCGCATTTTTAGCCAA
* **
6591 AAACCATGAT-G---GTACATAAT
641 AAATCATGATGGTTAGTACACGAT
*** * * * * * * *
6611 TTTTACTAAAATTTTTGAAAAAATTGAGCCGAAAAATTTATCCTCAATTTTTGGCAACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * *
6676 ACAAAAAATATATAATTCAATGCCA-AAAGGATTGAACGGCTTTTCACA-CTTCTAATATCGTTT
66 ACAAAAAATATATAATTCAATGCCAGAAA-AATTGAAGGGATTTTCA-AGCTTCTAATATCATTT
* * * * *
6739 TTC--AAAATTTATCCAAATTAATTTCTAATTATATCGAAACATGATTCAGATTCTTGCACAAAC
129 TTCAAAAAATTT-TCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAAC
* * * * * * *
6802 AAATCCTTAAATCCATTGCAGCTGAGATTTGGATAGATCATTAATGATAATTCAAGGAGTCTTGG
193 AAATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGG
* * *
6867 CACCAAAAATCATGCAAAACTGAG-TAGGGGCCCA-ATAGTGCATTTTTAGCCAAAAACCATGA-
258 CACCAAAAATCATGCAAAACTGAGCCA-GGG-CCATATAGCGCATTTTTAGCCAAAAATCATGAT
* ** * * * *
6929 ----CGTACACGATTTCGGCTAAAATTTTTGAGGAAACTGACCCAAAAAATATTTCCTACATTTT
321 GGTTAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCC-GAAAATTTTTTCTTCATTTT
* *
6990 TTGCCACAATACCCAC-AAAAATATATAATTCAATGCCAAAAAGATTGAAGGGTTTTTCACGCTT
385 TTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTT
* * * *
7054 CTAATATTGTTTTTCAAATTTTTTTCCAAATTAATTTATAACTAAATCGAAACATGATTCCGATG
450 CTAATATCGTTTTTCAAA-ATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATG
* * * * *
7119 TTCGCAAAAACAAATCCTTAAAACCATTGTGGTTGAGATTTGGTTAGATAAATAAAGATATTTCA
514 CTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCA
* * * * *
7184 AGAAGTCTTGGAACCAAAAATCATGCAAAACTGAGCCGAGGACCCAGAGCGCATTTTTAGCC-AA
579 AGGAGTCTT-GCACCAAAAATCATGCAAAACTGAGCAG-GGCCCCATAGCGCATTTTTAGCCAAA
* *
7248 AACCATGATGG-T--TACATGAT
642 AATCATGATGGTTAGTACACGAT
* * * * *
7268 TTCGGCTAAAATTTTTGAAAAAACT-ACCCGAAAAATATTTCCT-TA-ATTTTGACCACAATATT
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTG-CCACAATACT
* * * * **
7330 CATAGAAAATATATAATTTAATGCC-GAAAAGATTGAAGGGCTTTTCGCGCTTCTAATATCATTT
65 CACAAAAAATATATAATTCAATGCCAGAAAA-ATTGAAGGGATTTTCAAGCTTCTAATATCATTT
* * * * *
7394 TTC-AAAATTTTTCCAAAATAATTTCTAATTAAATCGAAATATGATTCAGATGCTTGCAAAAACA
129 TTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACA
* *
7458 AATCCTTAAATCCATTGCGGCTGAGATTTGGATAGATGAATAAAGATATTTCAAGGAGTCTTGGC
194 AATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGC
* * * ** *
7523 ACCAAAACTCATGCAAAACTGAGTCGGGGCCCCATAGCGCATTTTTAGTCAAAAATCATGA----
259 ACCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGT
7584 T-G---AC----TCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTAC-TCAATTTTTT
324 TAGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTT-CTTC-ATTTTTT
* *
7640 GCTACAAATACTCACAAAAAATATATAATTCAATGCCAAAAATATTGAAGGGCTTTTCACGCTTC
387 GCCAC-AATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTC
* * * * *
7705 TAATATCGTTTTTCAAAATTTTTTCCAAATTAATTTCTAACTAAATCGAGACATGATTAAGACGT
451 TAATATCGTTTTTCAAAA-TTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGC
*
7770 TCGCAAAAACAAATCCTTAAATCCTTTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAA
515 TCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAA
* * *
7835 GGTGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCCCATAGCGCATTTTTAGGCAAAA
580 GGAGTCTT-GCACCAAAAATCATGCAAAACTGAG-CAGGGCCCCATAGCGCATTTTTAGCCAAAA
*** * * *
7900 AT--TGAAACATGATGTATATGAT
643 ATCATG-ATGGTTA-GTACACGAT
* * * *
7922 TTCAGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTACTCAATTTTTTGCCACAATGCTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * * *
7987 ACAAAAAATATATAATTCAGTGCCA-AAAATATTGAAGGGCTTTTCACGCATCTAATGTCGTTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAA-ATTGAAGGGATTTTCAAGCTTCTAATATCATTTT
** * *
8051 TCAAAATTTTTTCCAAATTAATTTCTATCT--ATCGAAACATGATTCAGATGCTCGAAAAAACAA
130 TCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAA
* * *
8114 ATTCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTCGCA
195 ATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCA
* ** **
8179 CCAAAAATTATGCAAAACTGAGCCTTGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTT
260 CCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTT
* * ** * * *
8244 ATTACACGATTTCGGCTAAAATTTTTGAAAAAAATGACCTAAAAAATTTTTCCTCAATTTTTGAC
325 AGTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCTTCATTTTTTG-C
* * * * * * *
8309 CACAGTGCTCATAGAAAATATATATATATATAATTCAATGCCGAAAAGATTGATGGGTTTTTCGC
389 CACAATACTC----ACAA-A-A-A-ATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCAC
* *** *
8374 GCTTCTAATATTGTTTTTTCAAAAAAAAATTCCAAATTAATTTTTAATTAAATCGAAACATGATT
446 GCTTCTAATATCG-TTTTTC--AAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATT
* * * * * * *
8439 CAAATGCTTGCAAAAACAAATCCTTAAATCCATTGCCGCTGATATTTGGATAGATGAAGAAAGAA
508 CAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGAT
* * * *
8504 ATTTCAAGGAGTCTTGGAACCAAAAATCATGCAAAAACTGAGCTGGGCCCC--GGAGCATTTTTA
573 ATTTCAAGGAGTCTT-GCACCAAAAATCATGC-AAAACTGAGCAGGGCCCCATAGCGCATTTTTA
* * *
8567 GCCAAAAACCATGATGGTTTGTACAGGAT
636 GCCAAAAATCATGATGGTTAGTACACGAT
* * * * * *
8596 TTCGGCTAAAATTTTTGAATAAACTGACCCAAAAAATTTTTCCTCAATTGTTCGCCACAATACTC
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
* * * * **
8661 AC-AGAAATATATAATTCAACGCCA-AAAAGATTGAAGGGTTTTTCACGCTTCTAATATTGTTTT
66 ACAAAAAATATATAATTCAATGCCAGAAAA-ATTGAAGGGATTTTCAAGCTTCTAATATCATTTT
** * * **
8724 TCAAAATTTTTTCCAAATTAATTTCTAATTAAATCGAAACATGATTCAGAAGCTCATAAAAACAA
130 TCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAA
* * * *
8789 ATCCTTAAATCCATTGCGGCTGAGATTTGGATAGATGAATAAAGACATTTCAAGGAGTCTTGACA
195 ATCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCA
** * *
8854 CCAAAAATCATGCAAAACTGAGCTGGGGCCCTAGAGCGCATTTTTAGCCAAAAATCATGATGGTT
260 CCAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTT
* * * * ** *
8919 AGTACACGATTTTGGCT-AAATTTTTGAAAAAAAAAATTTATCCGAAAAAATTTTCCTCAATTTT
325 AGTACACGATTTCGGCTAAAATTTTTG----AAAAAACTGACCCGAAAATTTTTTCTTC-ATTTT
** * *
8983 GGGCCACAATACTCACAAAAAATATATAATTCAAAGCCAAATAGATTGAAGGGCTTTTCACGCTT
385 TTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTT
* * * *
9048 CTATTATCGTTTTTCAAAATTTTTTCCAAATTAAATTCTAACTAAATCGGAACATGATTCAGATG
450 CTAATATCGTTTTTCAAAA-TTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATG
* *
9113 CTCGCAAAAACAAATCATTAAATCCATTGCGGCTGAGATTTAGTTAGATGAATAAAGATATTTCA
514 CTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCA
* * * * *
9178 ATGAGTCTTGACACAAAAAATCATGCAAAACTGAGCTGGTTCCCCAAAGCGCATTTTTAGCCAAA
579 AGGAGTCTTG-CACCAAAAATCATGCAAAACTGAGCAGG-GCCCCATAGCGCATTTTTAGCCAAA
* *
9243 AACCATGATGGTTAGTATACGAT
642 AATCATGATGGTTAGTACACGAT
* * * * * * * * *
9266 TTCAGCTAAAATTTATGAAAAAATTGACTCG-AAATAATTATCCTCAATTTTTGGACACAATACT
1 TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAAT-TTTTTCCTCCATTTTTTGCCACAATACT
* * * * * * * *
9330 CACAAAAAAATATATAATTCAAAGCTA-AATAGATTGAATGGCTTTTCACGCTTCTATTATCGTT
65 CAC-AAAAAATATATAATTCAATGCCAGAA-AAATTGAAGGGATTTTCAAGCTTCTAATATCATT
** * *
9394 TTTCAAAATTTTTTCTAAATTAATTTCTTACTAAATCGA
128 TTTCAAAAAATTTTCCAAATTAATTTCTAACTAAATCGA
9433 GATTTTAGCC
Statistics
Matches: 7683, Mismatches: 855, Indels: 453
0.85 0.10 0.05
Matches are distributed among these distances:
634 3 0.00
635 45 0.01
636 223 0.03
637 193 0.03
638 81 0.01
639 5 0.00
641 3 0.00
642 1 0.00
643 4 0.00
644 4 0.00
647 9 0.00
648 39 0.01
649 10 0.00
650 296 0.04
651 312 0.04
652 6 0.00
653 5 0.00
654 228 0.03
655 418 0.05
656 143 0.02
657 207 0.03
658 105 0.01
659 177 0.02
660 306 0.04
661 51 0.01
662 277 0.04
663 493 0.06
664 506 0.07
665 304 0.04
666 362 0.05
667 294 0.04
668 651 0.08
669 382 0.05
670 262 0.03
671 285 0.04
672 389 0.05
673 114 0.01
674 142 0.02
675 172 0.02
676 127 0.02
677 13 0.00
678 31 0.00
679 5 0.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (664 bp):
TTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCCTCCATTTTTTGCCACAATACTC
ACAAAAAATATATAATTCAATGCCAGAAAAATTGAAGGGATTTTCAAGCTTCTAATATCATTTTT
CAAAAAATTTTCCAAATTAATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAA
TCCTTAAACCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCAC
CAAAAATCATGCAAAACTGAGCCAGGGCCATATAGCGCATTTTTAGCCAAAAATCATGATGGTTA
GTACACGATTTCGGCTAAAATTTTTGAAAAAACTGACCCGAAAATTTTTTCTTCATTTTTTGCCA
CAATACTCACAAAAAATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATA
TCGTTTTTCAAAATTTTTCCAAATTAATTTTTAACTAAATCGAAACATGATTCAGATGCTCGCAA
AAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTC
TTGCACCAAAAATCATGCAAAACTGAGCAGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGAT
GGTTAGTACACGAT
Found at i:4723 original size:335 final size:333
Alignment explanation
Indices: 2326--9432 Score: 9149
Period size: 334 Copynumber: 21.4 Consensus size: 333
2316 GGTTAGTACA
* *
2326 CGAAAATCTTTTTCCTCCATTTTTTGCCACAATACTCACAAATAATATATAATTCAATGCCAGAA
1 CGAAAAT-TTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AA
* * *
2391 AGATTGAAGGGCTTTTCAAGCTTCTAATATCATTTTTCAAAAAATTTTCCAAATTAATTTCTAAC
64 AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAAC
* * *
2456 TAAATCGAAACATGATTTAGATGCTCGCAAAAACAAATCCTTAAATCAATTGTGGCTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* * * *
2521 GTTACATGAATAAAGATATTTCAA-GATATCTTGGCACTAAAAATCATGCAAAACTGAGCCTGGG
194 GTTAGATGAATAAAGATATTTCAAGGA-GTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGG
* * *
2585 CCCCATAGCGCATTTTTAGGCAAAAATCATGATGGTTAATACACGATTTCGGCTAAAATTTTTTA
258 CCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGA
2650 AAAAACTGACC
323 AAAAACTGACC
** *
2661 CGAAAATTTTTTCCTTTATTTTTTGCCACAAAACTCACAAAAAATATATAATTCAATGCCACAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* ** * *
2726 GATTGAAGGGCTTTTTACGCTTGAAATATCGTTTTTCAAAATTTTTTCCAAATTAATTTTTAACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* * * *
2791 AAATCGGAATATGATTTAGATGCTCGCAAAAACAAATCCTTAAATCTATTGCGGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * *
2856 TTAGATGAATAAAGATATTTCAAGGAGTC-TGCACACCAAACATCATGCAAAACTGAGTCGGGGC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTG-GCACCAAAAATCATGCAAAACTGAGCCGGGGC
* * * *
2920 CCCATAGCGCCTTTTT-GGCAAAAATCATGATGGTTTGTACACGATTTCGGCTAAAACTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
2984 AAAACTGACC
324 AAAACTGACC
* * *
2994 CGAAAACTTTTTCCTCCATTTTTTGCCATAATACTCACAAAAAATATATAATTCAATGCCAGAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* **
3059 GATTGAAGGGCTTTTCAAGCTTCTAATATC-AATTTCAAAAATTTTTCCAAATTAATTTCTAACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* * * *
3123 AAATTC-AAACATGATTCAGATGCTCGTAAAAACAAATCCTTATACCCATTGCGGCTTAGATTTG
130 AAA-TCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* * * * *
3187 GTTGGATGAAAAAAAATATTTC---GAGTCTTGGCACTAAAAATCATGCAAAACTGAGCCTGGGC
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
*
3249 CCCATAGCGCATTTTTAGGCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
3314 AAAACTGACC
324 AAAACTGACC
* *
3324 CGAAAATTTTTTCCTCCATTTTTTGCCACAATACTCACAAAAATTATATAATTCAATGCCAGAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* * * * *
3389 GAGTGAAGGGCTTCTCAAGCTTCTAATATC-ATTTTCAAAAAATTTTCCAAATTAATTTCTAACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
*
3453 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTATATCCATTGCGGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
3518 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCA-CAAAAATCATGCAAAACTGAGCCGGGGCC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCC
3582 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTT--TACACGATTTCGGCTAAAATTTTTGAAA
260 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAAA
3645 AAACTGACC
325 AAACTGACC
*
3654 CGAAAATTTTTTCCTCCATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCACAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* ** * *
3719 GATTGAAGGGCTTTTTACGCTTGAAATATCGTTTTTC-AAAATTTTTCCAGATTAATTTTTAACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* * * *
3783 AAATCGAAATATGATTCAGATGGTCGCAAAAACAAATCCTTAAACCCATTGCGGTTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * *
3848 TTAGATGATTAAACATATTTCAAGGAGTC-TGGACACCAAAAATCATGCAAAACTGAGTCGGGGC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGG-CACCAAAAATCATGCAAAACTGAGCCGGGGC
* * *
3912 CCCATAGCGCATTTGTAGGCAAAAATCATGA----T-G--CACGATTTCGACTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
3970 AAAACTGACC
324 AAAACTGACC
* * * *
3980 CGAAAA-TTTTTCCTCCATTTTTTGCCACAATACTCAC-AAAACTGACCCGAAAATTCAATGCCA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAAT-A---TATAATTCAATGCCA
* * **
4043 GAAAGATTGAAGGGCTTTTCAAGCTTCTAATATCATTTTTCAAAAAAATTTCCAAATTAATTTCT
62 -AAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCT
* * *
4108 AACTAAATCGAAACATGATTTAGATGCTCGCAAAAACAAATCCTTAAATCAATTGTGGCTGAGAT
126 AACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGAT
* * *
4173 TTGGTTAAATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATTATGCAAAACTGAGTCGG
191 TTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGG
* *
4238 GGCCCCATAGAGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGACTAAAATTTTT
256 GGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTT
*
4303 GAAAAAACTAACC
321 GAAAAAACTGACC
* * * *
4316 CGAAAATTTTTTTCTCCATTTTTTGCCACAATACTCCCAAAAAATATATAATTGAATGCCAAGAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAA-AA
* * * * *
4381 GATTGAAGGGCTTTTCAAGCTTCTAATATCATTATTCAAAAAATTTTCCAAATTAATTTCTTACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
*
4446 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * * * * * *
4511 TTAGATCAATAAAGATATTTTCCAGGAGTCTTGGTACAAAAAATCATACAAAACTGAGCCGGAGT
195 TTAGATGAATAAAGATA-TTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
* * *
4576 CCCATAGCGCATTTTTAGGCAAAAATCATGATGGTTAGTACACTATTTCGACTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
4641 AAAACTGACC
324 AAAACTGACC
* * * * *
4651 CGAAAGTTTTTTACTCAATTTTTTTCCACAATACTCATAAAAATTATATAATTCAATGCCAAAAT
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAA-
* * * * * *
4716 AATTGAAGGG-TTTTCACGCTTCTAATATCGTCTTTCAAAATTTTTTCCCAATTAATTTATAATT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* *
4780 AAAAGT-GAAACTTGATTCAGATACTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTT
130 -AAA-TCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTT
*
4844 GGTTAGTTGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGG
193 GGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGG
* *
4909 CCCCATAGCGCATTTTTAGGCAAAAATCATGATGGTTAGTACACTATTTCGGCTAAAATTTTTGA
258 CCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGA
4974 AAAAACTGACC
323 AAAAACTGACC
* *
4985 CGAAAATTTTTTTTTCCTCCATTTTTTGCCACAATACTCAAAAAAAATATATAATTCAATGCCAG
1 CGAAAA---TTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-
* * * * * *
5050 AAAGATTGTAGGGCTTTTCAAGCTTCTAATATCATTTTTCAAAATTTTTTCAAAATTAATTTTTA
62 AAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTA
* * * *
5115 ACTAAATCTAAACATGATTCGGATAG-TTGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGAT
127 ACTAAATCGAAACATGATTCAGAT-GCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGAT
* * * * *
5179 TTGGTTAGATGTATAAAGATATTTCAAGGAGTCTTGACACCCAAAATCATGCAAAACTAAGTCGG
191 TTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGG
* * * * * *
5244 GGCCCCATAGTGCATTTTTAGGCAAAAATCATGATGGTAACATACAAGATTTCGGCTAAACTTTT
256 GGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTA-GTACACGATTTCGGCTAAAATTTT
5309 TGAAAAAACTGACC
320 TGAAAAAACTGACC
* *
5323 CGAAAATTTATTCCTCCATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCACAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* * ** *
5388 GATTGAAGGGCTTTTTACGATTGAAATATCGTTTTTC-AAAATTTTTTC-AA--AA----T---T
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* *
5442 -AAT------ATGATTCAGATGCTCGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGAGTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* *
5500 TTAGATGAATAAAGATATTTCAAGGAGTC-TGGACACCAGAAATCATGCATAACTGAGCCGGGGC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGG-CACCAAAAATCATGCAAAACTGAGCCGGGGC
* * * *
5564 CCCATAGCGCAATTTTAGCCAAAAATCATGATAGTTAGTACACAATTTCGGCTATAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
*
5629 AATACTGACC
324 AAAACTGACC
* * * * *
5639 CAAAAATTTATTCCTCCATTTTTTACCACAATAATCACAAAAAATATATAATTCAATGCCACAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCA-AAA
* ** * * *
5704 GATTGAAGGGCTTTTTACGCTTGAAATATTGTTTTT-AAAAATTTTTTCCAGATTAATTTTTAAC
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAA-TTTTTCCAAATTAATTTCTAAC
* * *
5768 TAAATCGAAATATGATTCAGATACTCGCAAAAACAAATCCTTAAACCCATTGCGGCTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* *
5833 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCATAACTGAACCGGGGC
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
* * *
5898 CCCATTGTGCATTTTTAGGCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
5963 AAAACTGACC
324 AAAACTGACC
*
5973 CGAAAATTTTTTCCTCTATTTTTTGCCACAATACTCACAAAAGAATATATAATTCAATGCCAAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAA-AATATATAATTCAATGCC-AAA
* ** *
6038 AGATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCAAATTTTTTTCCAAATTAATTTCTAAT
64 AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAAC
* * ** * * * * * *
6103 TAAATCGAAACATGATTTAGGTGCTCATAAAAACAAAACCTTGAAGCCAATGGGGTTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* * * *
6168 GTTAGATGAATATAGAAATTTCAAGGAGTCTTGGCACCAAAAATCATTCAAAACTAAGCCGGGGC
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
* * * *
6233 TCCATAGCGCATGTTTAGCCAAAAAATCATGATAGTTATTACACGATTTCGGCTAAAATTTTTG-
259 CCCATAGCGCATTTTTAGCC-AAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGA
*
6297 AAAAACTGAGC
323 AAAAACTGACC
* * *
6308 TGAAAAATTTTTTCCTCAA-TTTTTGACCACAATACTCATAGAAAATATATAATTCAATGCCGAA
1 CG-AAAATTTTTTCCTCAATTTTTTG-CCACAATACTCACAAAAAATATATAATTCAATGCC-AA
* * * * *
6372 AAGATTGAAGGGCTTTCCGCGCTTCTAATTTCATTTTTCAAAATTTTTTTCCAAATTAATTTCTA
63 AAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAA-ATTTTTCCAAATTAATTTCTA
* * * * * *
6437 ATTCAATTGAAACATGATTCAGATGCTTGCAAAAAGAAATCCTTAAATCCATTGCGGCTGAGGTT
127 ACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATT
* * *
6502 TGGATAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAACCATGCAAAACTGAGCTGGG
192 TGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGG
* * * ** ***
6567 GCCCCAGAACGCATTTTTAGCCAAAAACCATGAT-G---GTACATAATTTTTACTAAAATTTTTG
257 GCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTG
* *
6628 AAAAAATTGAGC
322 AAAAAACTGACC
* * * *
6640 CGAAAAATTTATCCTCAATTTTTGGCAACAATACTCACAAAAAATATATAATTCAATGCCAAAAG
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAA-
* * * *
6705 GATTGAACGGCTTTTCACACTTCTAATATCGTTTTTC-AAAATTTATCCAAATTAATTTCTAATT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* * * * *
6769 ATATCGAAACATGATTCAGATTCTTGCACAAACAAATCCTTAAATCCATTGCAGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * * * * **
6834 ATAGATCATTAATGATAATTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGTAGGGGCC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCC
* * * * **
6899 CAATAGTGCATTTTTAGCCAAAAACCATGA-----CGTACACGATTTCGGCTAAAATTTTTGAGG
260 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAAA
6959 AAACTGACC
325 AAACTGACC
* * * *
6968 CAAAAAATATTTCCT-ACATTTTTTGCCACAATACCCAC-AAAAATATATAATTCAATGCCAAAA
1 CGAAAATTTTTTCCTCA-ATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCC-AAA
* * ** *
7031 AGATTGAAGGGTTTTTCACGCTTCTAATATTGTTTTTCAAATTTTTTTCCAAATTAATTTATAAC
64 AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAAC
* * * * *
7096 TAAATCGAAACATGATTCCGATGTTCGCAAAAACAAATCCTTAAAACCATTGTGGTTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* * * * *
7161 GTTAGATAAATAAAGATATTTCAAGAAGTCTTGGAACCAAAAATCATGCAAAACTGAGCCGAGGA
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
* * *
7226 CCCAGAGCGCATTTTTAGCC-AAAACCATGATGG-T--TACATGATTTCGGCTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
7287 AAAACT-ACC
324 AAAACTGACC
* * * * * * *
7296 CGAAAAATATTTCCTTAA--TTTTGACCACAATATTCATAGAAAATATATAATTTAATGCCGAAA
1 CGAAAATTTTTTCCTCAATTTTTTG-CCACAATACTCACAAAAAATATATAATTCAATGCC-AAA
* * * *
7359 AGATTGAAGGGCTTTTCGCGCTTCTAATATCATTTTTC-AAAATTTTTCCAAAATAATTTCTAAT
64 AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAAC
* *
7423 TAAATCGAAATATGATTCAGATGCTTGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
* * *
7488 GATAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAACTCATGCAAAACTGAGTCGGGGC
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
*
7553 CCCATAGCGCATTTTTAGTCAAAAATCATGA----T-G---AC----TCGGCTAAAATTTTTGAA
259 CCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAA
7606 AAAACTGACC
324 AAAACTGACC
* *
7616 CGAAAATTTTTTACTCAATTTTTTGCTACAAATACTCACAAAAAATATATAATTCAATGCCAAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCAC-AATACTCACAAAAAATATATAATTCAATGCC-AAA
* *
7681 ATATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAATTTTTTCCAAATTAATTTCTAAC
64 AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAAC
* * * * *
7746 TAAATCGAGACATGATTAAGACGTTCGCAAAAACAAATCCTTAAATCCTTTGCGGCTGAGATTTG
129 TAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTG
*
7811 GTTAGATGAATAAAGATATTTCAAGGTGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
194 GTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGC
* *** * * * *
7876 CCCATAGCGCATTTTTAGGCAAAAAT--TGAAACATGATGTATATGATTTCAGCTAAAATTTTTG
259 CCCATAGCGCATTTTTAGCCAAAAATCATG-ATGGTTA-GTACACGATTTCGGCTAAAATTTTTG
7939 AAAAAACTGACC
322 AAAAAACTGACC
* * *
7951 CGAAAATTTTTTACTCAATTTTTTGCCACAATGCTCACAAAAAATATATAATTCAGTGCCAAAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCC-AAAA
* * * * *
8016 TATTGAAGGGCTTTTCACGCATCTAATGTCGTTTTTCAAAATTTTTTCCAAATTAATTTCTATCT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* *
8081 --ATCGAAACATGATTCAGATGCTCGAAAAAACAAATTCTTAAATCCATTGCGGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * **
8144 TTAGATGAATAAAGATATTTCAAGGAGTCTTCGCACCAAAAATTATGCAAAACTGAGCCTTGGCC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCC
*
8209 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTATTACACGATTTCGGCTAAAATTTTTGAAA
260 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAAA
*
8274 AAAATGACC
325 AAACTGACC
** * * * *
8283 TAAAAAATTTTTCCTCAA-TTTTTGACCACAGTGCTCATAGAAAATATATATATATATAATTCAA
1 CGAAAATTTTTTCCTCAATTTTTTG-CCACAATACTC----ACAA-A-A-A-ATATATAATTCAA
* * * * ***
8347 TGCCGAAAAGATTGATGGGTTTTTCGCGCTTCTAATATTGTTTTTTCAAAAAAAAATTCCAAATT
57 TGCC-AAAAGATTGAAGGGCTTTTCACGCTTCTAATATCG-TTTTTC-AAAAATTTTTCCAAATT
* * * * *
8412 AATTTTTAATTAAATCGAAACATGATTCAAATGCTTGCAAAAACAAATCCTTAAATCCATTGCCG
119 AATTTCTAACTAAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGG
* * * * *
8477 CTGATATTTGGATAGATGAAGAAAGAAATTTCAAGGAGTCTTGGAACCAAAAATCATGCAAAAAC
184 CTGAGATTTGGTTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGC-AAAAC
* * * * * *
8542 TGAG-CTGGGCCCC--GGAGCATTTTTAGCCAAAAACCATGATGGTTTGTACAGGATTTCGGCTA
248 TGAGCCGGGGCCCCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTA
*
8604 AAATTTTTGAATAAACTGACC
313 AAATTTTTGAAAAAACTGACC
* * * * * *
8625 CAAAAAATTTTTCCTCAATTGTTCGCCACAATACTCAC-AGAAATATATAATTCAACGCCAAAAA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCC-AAAA
* * * *
8689 GATTGAAGGGTTTTTCACGCTTCTAATATTGTTTTTCAAAATTTTTTCCAAATTAATTTCTAATT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* **
8754 AAATCGAAACATGATTCAGAAGCTCATAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * * *
8819 ATAGATGAATAAAGACATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGCTGGGGCC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCC
* * *
8884 CTAGAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTTGGCT-AAATTTTTGAAA
260 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTG---
* * *
8948 AAAAAAATTTATC
322 -AAAAAACTGACC
** ** *
8961 CGAAAAAATTTTCCTCAATTTTGGGCCACAATACTCACAAAAAATATATAATTCAAAGCCAAATA
1 CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAA-A
* * *
9026 GATTGAAGGGCTTTTCACGCTTCTATTATCGTTTTTCAAAATTTTTTCCAAATTAAATTCTAACT
65 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACT
* * *
9091 AAATCGGAACATGATTCAGATGCTCGCAAAAACAAATCATTAAATCCATTGCGGCTGAGATTTAG
130 AAATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGG
* * * * **
9156 TTAGATGAATAAAGATATTTCAATGAGTCTTGACACAAAAAATCATGCAAAACTGAGCTGGTTCC
195 TTAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCC
* * * * *
9221 CCAAAGCGCATTTTTAGCCAAAAACCATGATGGTTAGTATACGATTTCAGCTAAAATTTATGAAA
260 CCATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAAA
* *
9286 AAATTGACT
325 AAACTGACC
* * * * * *
9295 CG-AAATAATTATCCTCAATTTTTGGACACAATACTCACAAAAAAATATATAATTCAAAGCTAAA
1 CGAAAAT-TTTTTCCTCAATTTTTTGCCACAATACTCAC-AAAAAATATATAATTCAATGCCAAA
* * * * *
9359 TAGATTGAATGGCTTTTCACGCTTCTATTATCGTTTTTCAAAATTTTTTCTAAATTAATTTCTTA
64 -AGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAA
9424 CTAAATCGA
128 CTAAATCGA
9433 GATTTTAGCC
Statistics
Matches: 5973, Mismatches: 665, Indels: 268
0.86 0.10 0.04
Matches are distributed among these distances:
316 135 0.02
317 142 0.02
318 1 0.00
319 24 0.00
320 19 0.00
321 5 0.00
322 71 0.01
323 171 0.03
324 7 0.00
325 33 0.01
326 45 0.01
327 232 0.04
328 345 0.06
329 411 0.07
330 513 0.09
331 298 0.05
332 391 0.07
333 255 0.04
334 918 0.15
335 778 0.13
336 311 0.05
337 483 0.08
338 105 0.02
339 1 0.00
340 44 0.01
341 6 0.00
342 109 0.02
343 4 0.00
344 107 0.02
345 9 0.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (333 bp):
CGAAAATTTTTTCCTCAATTTTTTGCCACAATACTCACAAAAAATATATAATTCAATGCCAAAAG
ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCAAAAATTTTTCCAAATTAATTTCTAACTA
AATCGAAACATGATTCAGATGCTCGCAAAAACAAATCCTTAAATCCATTGCGGCTGAGATTTGGT
TAGATGAATAAAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGGGGCCC
CATAGCGCATTTTTAGCCAAAAATCATGATGGTTAGTACACGATTTCGGCTAAAATTTTTGAAAA
AACTGACC
Found at i:9967 original size:55 final size:55
Alignment explanation
Indices: 9883--9996 Score: 228
Period size: 55 Copynumber: 2.1 Consensus size: 55
9873 TGGCGAACAT
9883 GGGACAATTCTTGCCCCATGGGAGGACATTATTTGAGGAGTCACATTCTTCATGA
1 GGGACAATTCTTGCCCCATGGGAGGACATTATTTGAGGAGTCACATTCTTCATGA
9938 GGGACAATTCTTGCCCCATGGGAGGACATTATTTGAGGAGTCACATTCTTCATGA
1 GGGACAATTCTTGCCCCATGGGAGGACATTATTTGAGGAGTCACATTCTTCATGA
9993 GGGA
1 GGGA
9997 AACCGTTGTG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (55 bp):
GGGACAATTCTTGCCCCATGGGAGGACATTATTTGAGGAGTCACATTCTTCATGA
Found at i:29640 original size:3 final size:3
Alignment explanation
Indices: 29632--29665 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
29622 AGATGGCTCA
29632 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
29666 TACCTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:34829 original size:6 final size:6
Alignment explanation
Indices: 34818--34960 Score: 54
Period size: 6 Copynumber: 22.8 Consensus size: 6
34808 AGTTGCAGGT
* * * ** * *
34818 GATGAA GATGAA GACGAA GCTGAA TATGATCA GGATGAA GAACAT GAGGAA
1 GATGAA GATGAA GATGAA GATGAA GATGA--A -GATGAA GATGAA GATGAA
* * * * * * * *
34869 GAGGAA GATGAT GATGAC TATGAT GAGGAA GACGAA GAGGAA GA-GAAA
1 GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATGAA GATG-AA
* * *
34917 GATGAA GTTGAA GGTGATGAA GATGAA GACGAA GCTGAA GATGA
1 GATGAA GATGAA ---GATGAA GATGAA GATGAA GATGAA GATGA
34961 TCAGGATGAA
Statistics
Matches: 101, Mismatches: 28, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
5 1 0.01
6 88 0.87
7 2 0.02
8 1 0.01
9 9 0.09
ACGTcount: A:0.44, C:0.06, G:0.35, T:0.15
Consensus pattern (6 bp):
GATGAA
Found at i:34938 original size:27 final size:27
Alignment explanation
Indices: 34915--34972 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
34905 GAGGAAGAGA
* * *
34915 AAGATGAAGTTGAAGGTGATGAAGATG
1 AAGACGAAGCTGAAGATGATGAAGATG
* *
34942 AAGACGAAGCTGAAGATGATCAGGATG
1 AAGACGAAGCTGAAGATGATGAAGATG
34969 AAGA
1 AAGA
34973 AGATGATGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.43, C:0.05, G:0.34, T:0.17
Consensus pattern (27 bp):
AAGACGAAGCTGAAGATGATGAAGATG
Found at i:34962 original size:114 final size:114
Alignment explanation
Indices: 34762--34978 Score: 362
Period size: 114 Copynumber: 1.9 Consensus size: 114
34752 CCCCCAAAAC
*
34762 ATGATGAAAACTATGATGAAAAAGACGAAGAGAAAGAGAAAGATGAAGTTGCAGGTGATGAAGAT
1 ATGATGAAAACTATGATGAAAAAGACGAAGAGAAAGAGAAAGATGAAGTTGAAGGTGATGAAGAT
*
34827 GAAGACGAAGCTGAATATGATCAGGATGAAGAACATGAGGAAGAGGAAG
66 GAAGACGAAGCTGAAGATGATCAGGATGAAGAACATGAGGAAGAGGAAG
** ** *
34876 ATGATGATGACTATGATGAGGAAGACGAAGAGGAAGAGAAAGATGAAGTTGAAGGTGATGAAGAT
1 ATGATGAAAACTATGATGAAAAAGACGAAGAGAAAGAGAAAGATGAAGTTGAAGGTGATGAAGAT
*
34941 GAAGACGAAGCTGAAGATGATCAGGATGAAGAAGATGA
66 GAAGACGAAGCTGAAGATGATCAGGATGAAGAACATGA
34979 TGATGACTAT
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 95 1.00
ACGTcount: A:0.46, C:0.06, G:0.33, T:0.16
Consensus pattern (114 bp):
ATGATGAAAACTATGATGAAAAAGACGAAGAGAAAGAGAAAGATGAAGTTGAAGGTGATGAAGAT
GAAGACGAAGCTGAAGATGATCAGGATGAAGAACATGAGGAAGAGGAAG
Found at i:40620 original size:27 final size:27
Alignment explanation
Indices: 40600--40653 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
40590 TAATTTCAGT
40600 GACTAATGTTCGAACCCTAATGGTCTC
1 GACTAATGTTCGAACCCTAATGGTCTC
40627 GACTAATGTTCGAACCCTAATGGTCTC
1 GACTAATGTTCGAACCCTAATGGTCTC
40654 AAGTATCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (27 bp):
GACTAATGTTCGAACCCTAATGGTCTC
Found at i:40621 original size:14 final size:14
Alignment explanation
Indices: 40602--40648 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
40592 ATTTCAGTGA
40602 CTAATGTTCGAACC
1 CTAATGTTCGAACC
40616 CTAATGGTCTCG-A--
1 CTAAT-GT-TCGAACC
40629 CTAATGTTCGAACC
1 CTAATGTTCGAACC
40643 CTAATG
1 CTAATG
40649 GTCTCAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
11 3 0.11
12 3 0.11
13 5 0.18
14 11 0.39
15 3 0.11
16 3 0.11
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (14 bp):
CTAATGTTCGAACC
Found at i:46740 original size:161 final size:152
Alignment explanation
Indices: 46471--46786 Score: 469
Period size: 152 Copynumber: 2.0 Consensus size: 152
46461 GAATAGACAT
*
46471 TAAAATTAACATCTTACAGCAGATATGATATAGAAAGAAACGAAGTTAAAGTTTGCTACACGTGA
1 TAAAATTAACATCTTACAGCAGATATGATATAGAAAGAAACAAAGTTAAAGTTTGCTACAC--G-
46536 TAGCTATCATCTTGTATCAATGTAGAGAGAAAACCTTCTTGACAAACTTGACATATGCCAAAAAG
63 -AGCTA-CATCTTGTATCAATGTAGAGAGAAAA-C--CTT-ACAAACTTGACATATGCCAAAAAG
46601 AAAAGAAAGATGTGATAGTTACAACAAGCAA
122 AAAAGAAAGATGTGATAGTTACAACAAGCAA
46632 TAAAATTAACATCTTACAGCAGATATGATATAGAAAGAAACAAAGTTAAAGTTTGCTAC-C-AG-
1 TAAAATTAACATCTTACAGCAGATATGATATAGAAAGAAACAAAGTTAAAGTTTGCTACACGAGC
46694 TA-ATCTTGTATCAATGTAGAGAGAAAACCTTCTTAACAAACTTGACATATGCCAAAAAGAAAAG
66 TACATCTTGTATCAATGTAGAGAGAAAA-C--CTT-ACAAACTTGACATATGCCAAAAAGAAAAG
*
46758 ACAGATGTGATAGTTACAACAAGCAA
127 AAAGATGTGATAGTTACAACAAGCAA
46784 TAA
1 TAA
46787 TTTAGCCTAC
Statistics
Matches: 152, Mismatches: 3, Indels: 9
0.93 0.02 0.05
Matches are distributed among these distances:
152 89 0.59
154 2 0.01
155 2 0.01
160 1 0.01
161 58 0.38
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (152 bp):
TAAAATTAACATCTTACAGCAGATATGATATAGAAAGAAACAAAGTTAAAGTTTGCTACACGAGC
TACATCTTGTATCAATGTAGAGAGAAAACCTTACAAACTTGACATATGCCAAAAAGAAAAGAAAG
ATGTGATAGTTACAACAAGCAA
Found at i:51887 original size:26 final size:26
Alignment explanation
Indices: 51840--51889 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
51830 AGTTTTCATA
* *
51840 TTTAGGATTTCTTGGCTGTTAAGTAG
1 TTTAAGATTTCTTGGCTATTAAGTAG
**
51866 TTTAAGATTTCTTGTTTATTAAGT
1 TTTAAGATTTCTTGGCTATTAAGT
51890 TTTTATTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.22, C:0.06, G:0.20, T:0.52
Consensus pattern (26 bp):
TTTAAGATTTCTTGGCTATTAAGTAG
Found at i:53592 original size:2 final size:2
Alignment explanation
Indices: 53587--53614 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
53577 AACGAAAAAA
53587 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC
53615 TAATGCCTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:56276 original size:60 final size:61
Alignment explanation
Indices: 56212--56361 Score: 200
Period size: 60 Copynumber: 2.5 Consensus size: 61
56202 GCTAATTGCT
* * * *
56212 CAAATAAGGGCTTAATGTTTGTC-AAAATGCTCAAATAAGGGTTTGATCTTTTAATTTGGC
1 CAAATAAGGGCTTAATGTTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGAC
* *
56272 CAAATAAGGG-TCTAA-GGTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGAT
1 CAAATAAGGGCT-TAATGTTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGAC
*
56332 CAAATAAGGGCCTAATG-TTATCGAAAATGC
1 CAAATAAGGGCTTAATGTTTATCGAAAATGC
56362 AATAAGAGCC
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
59 6 0.08
60 72 0.91
61 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (61 bp):
CAAATAAGGGCTTAATGTTTATCGAAAATGCTCAAATAAGGGCTCGATCTTTTAATTTGAC
Found at i:56450 original size:31 final size:31
Alignment explanation
Indices: 56415--56514 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 31
56405 GACGTCGGGT
56415 CCTTATTTGAGCATTTTGGCAAACATTAGGC
1 CCTTATTTGAGCATTTTGGCAAACATTAGGC
* ** * * *
56446 CCTTATTTGATCAAATT--AAAAGATCAGGC
1 CCTTATTTGAGCATTTTGGCAAACATTAGGC
* *
56475 CCTTATTTGAGCTTTTTGGCAAACGTTAGGC
1 CCTTATTTGAGCATTTTGGCAAACATTAGGC
56506 CCTTATTTG
1 CCTTATTTG
56515 GCCACATTAA
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
29 22 0.42
31 31 0.58
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (31 bp):
CCTTATTTGAGCATTTTGGCAAACATTAGGC
Found at i:56508 original size:60 final size:60
Alignment explanation
Indices: 56415--56568 Score: 227
Period size: 60 Copynumber: 2.6 Consensus size: 60
56405 GACGTCGGGT
* *
56415 CCTTATTTGAGCATTTTGGCAAACATTAGGCCCTTATTTGATCAAATTAAAAGATCAGGC
1 CCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGGC
* * * * *
56475 CCTTATTTGAGCTTTTTGGCAAACGTTAGGCCCTTATTTGGCCACATTAAAAGATCATGT
1 CCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGGC
* *
56535 CCTTATTTGAGCATTTTGGTAAACGTTAAGCCCT
1 CCTTATTTGAGCATTTTGGCAAACGTTAGGCCCT
56569 AATCTGAGCA
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 84 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (60 bp):
CCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGACCAAATTAAAAGATCAGGC
Found at i:59984 original size:111 final size:113
Alignment explanation
Indices: 59807--60021 Score: 362
Period size: 111 Copynumber: 1.9 Consensus size: 113
59797 AAAAAAAACT
*
59807 TGTAATACATATTGTAAAGAAATTCCTTCTCTTTTTTTTTTTTTTAATCAAGGATATGCCGATTT
1 TGTAATACATATTGTAAAGAAA---CTTCTCTTTTTTTTTTTGTTAATCAAGGATATGCCGATTT
59872 TAACGTTTTTCATGTATTGTTGATGATAATTTGATGATTGTTCTCTAATAA
63 TAACGTTTTTCATGTATTGTTGATGATAATTTGATGATTGTTCTCTAATAA
**
59923 TGTAATACATATTGTAAAGAAA-TTC-CTTTTTTTTTTTGTTAATCAAGGATATGTTGATTTTAA
1 TGTAATACATATTGTAAAGAAACTTCTCTTTTTTTTTTTGTTAATCAAGGATATGCCGATTTTAA
59986 CGTTTTTCATGTATTGTTGATGATAATTTGATGATT
66 CGTTTTTCATGTATTGTTGATGATAATTTGATGATT
60022 TGTTGATCAT
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
111 71 0.74
112 3 0.03
116 22 0.23
ACGTcount: A:0.28, C:0.08, G:0.14, T:0.50
Consensus pattern (113 bp):
TGTAATACATATTGTAAAGAAACTTCTCTTTTTTTTTTTGTTAATCAAGGATATGCCGATTTTAA
CGTTTTTCATGTATTGTTGATGATAATTTGATGATTGTTCTCTAATAA
Found at i:65533 original size:21 final size:20
Alignment explanation
Indices: 65478--65536 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 20
65468 CTGTTTGGTA
65478 ACTGTATAGATGAGATTA-C
1 ACTGTATAGATGAGATTATC
* * * *
65497 ACAGTACAGATTAGATTATGT
1 ACTGTATAGATGAGATTAT-C
65518 ACTGTATAGATGAGATTAT
1 ACTGTATAGATGAGATTAT
65537 TAGAGCAACG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.34
Consensus pattern (20 bp):
ACTGTATAGATGAGATTATC
Done.