Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015462.1 Corchorus olitorius cultivar O-4 contig15495, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47270

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18906--18944
15
2.7
15
84
4
53
0
15
2
82
0.79
18912--18943
5
6.8
5
89
10
50
0
15
0
84
0.63
30717--30748
6
5.5
6
92
7
57
31
50
18
0
1.48
31632--31804
62
2.8
62
99
0
337
40
17
4
37
1.70
33961--33994
3
11.3
3
87
0
50
29
32
35
2
1.73
44351--44560
51
4.1
51
86
3
264
39
15
16
29
1.89
44555--44653
49
2.0
49
100
0
198
43
14
20
22
1.87
44604--44801
41
4.9
42
80
12
216
41
17
17
23
1.89
44765--44878
59
1.9
60
89
7
178
45
18
15
20
1.85
44825--44910
41
2.1
41
91
4
138
41
18
13
25
1.88
44831--44941
41
2.7
41
81
6
118
36
22
16
25
1.94
44682--44955
142
1.9
140
83
7
349
42
18
14
23
1.88
44766--45091
179
1.8
179
88
4
496
43
19
15
22
1.88
45001--45996
42
23.8
42
74
12
745
38
19
16
25
1.92
45001--45996
85
11.9
84
74
12
745
38
19
16
25
1.92
45767--45996
38
5.8
40
81
7
224
38
19
16
25
1.92
45582--45931
174
2.0
176
88
2
524
39
18
15
26
1.91
45758--45981
75
2.8
77
83
8
256
39
17
17
25
1.91
45992--47268
332
3.8
331
86
3
1659
32
14
15
37
1.88

Tables:   1

The End!