Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015463.1 Corchorus olitorius cultivar O-4 contig15496, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10601

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2216
332
6.7
331
87
3
2882
34
15
16
33
1.91
1--2189
665
3.3
662
87
3
3021
34
15
16
33
1.90
2028--2380
191
1.8
190
86
3
512
33
16
17
32
1.92
2216--5690
332
10.5
329
82
5
3861
34
15
16
34
1.90
2216--5666
990
3.5
985
83
5
4157
34
15
16
34
1.90
5692--8453
332
8.3
332
85
3
3529
34
15
16
34
1.90
9887--10410
50
10.2
50
90
3
762
33
28
32
5
1.81
9887--10410
156
3.4
151
89
5
777
33
28
32
5
1.81
10539--10593
2
27.5
2
92
0
92
45
0
54
0
0.99

Tables:   1

The End!