Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015464.1 Corchorus olitorius cultivar O-4 contig15497, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91944

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1696--1745
11
3.8
13
76
15
50
70
8
14
8
1.34
14925--14977
26
2.0
26
100
0
106
45
11
11
32
1.76
15824--15893
35
2.0
35
100
0
140
37
5
11
45
1.64
16770--16810
20
2.0
20
85
0
55
14
7
24
53
1.66
16912--16961
17
3.0
16
82
8
55
24
22
20
34
1.97
18540--18566
2
13.5
2
100
0
54
51
0
0
48
1.00
28319--28382
21
3.2
20
71
8
58
31
23
10
34
1.89
42317--42418
50
2.0
50
90
3
161
19
20
28
31
1.97
42610--42706
51
1.9
51
91
0
158
43
14
15
26
1.85
42481--42701
107
2.0
108
93
4
374
41
13
15
29
1.85
42663--42889
109
2.1
107
81
8
253
33
15
20
30
1.94
47925--47963
20
1.9
21
94
5
71
41
7
10
41
1.68
48104--48171
25
2.7
26
97
2
129
52
13
2
30
1.55
55290--55329
20
2.0
20
100
0
80
30
15
10
45
1.78
62158--62880
240
3.0
240
95
0
1293
33
16
27
21
1.95
80814--81472
354
1.9
354
86
2
957
38
18
22
20
1.93

Tables:   1

The End!