Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015465.1 Corchorus olitorius cultivar O-4 contig15498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24419

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7177--7376
99
2.0
99
100
0
400
30
19
13
37
1.89
10689--15494
655
7.4
652
88
4
7047
36
17
14
32
1.90
15237--15769
276
1.9
274
81
8
643
36
17
13
33
1.89
15498--18372
323
8.9
320
75
11
2574
35
17
13
32
1.90
15498--18372
625
4.4
654
90
4
4624
35
17
13
32
1.90
18893--19052
31
5.3
30
73
20
145
28
15
15
41
1.86
18916--19232
30
10.3
29
76
15
257
26
14
18
40
1.89
18893--19209
61
5.1
61
77
13
285
26
14
17
41
1.88
19002--19137
36
4.1
36
77
14
141
24
14
21
39
1.91
18916--19246
127
2.7
119
77
14
302
25
14
19
40
1.90
19423--19449
2
13.5
2
100
0
54
48
0
0
51
1.00
20177--20353
95
1.9
94
81
1
219
33
17
9
39
1.81
21554--23730
330
6.6
330
77
7
1728
37
16
14
32
1.88
21554--24419
660
4.5
640
83
8
2558
37
16
14
32
1.89
22771--24419
646
2.6
641
88
6
2429
36
17
14
31
1.89

Tables:   1

The End!