Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015466.1 Corchorus olitorius cultivar O-4 contig15499, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66744

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260--2783
316
8.0
315
77
12
2184
35
17
14
32
1.90
511--2791
925
2.4
925
83
8
2613
36
17
14
32
1.89
2682--2999
104
3.1
103
96
1
582
44
21
8
25
1.81
17446--17493
5
9.8
5
88
6
64
87
12
0
0
0.54
17452--17494
23
1.9
23
95
4
79
88
11
0
0
0.52
17451--17494
18
2.4
18
96
3
79
88
11
0
0
0.51
21943--21989
24
2.0
24
87
4
69
38
10
17
34
1.84
27602--27642
20
2.0
20
95
0
73
12
34
43
9
1.75
31055--31080
2
13.0
2
100
0
52
50
0
0
50
1.00
33382--33452
28
2.5
29
93
6
119
16
12
21
49
1.79
38157--38208
25
2.1
25
100
0
104
36
19
3
40
1.70
38338--38437
17
6.9
15
71
21
72
28
14
5
53
1.61
38338--38436
43
2.3
43
100
0
198
28
13
5
53
1.60
50804--50918
59
1.9
59
96
0
212
39
12
9
39
1.75
61350--61527
96
1.9
96
89
0
275
36
14
22
26
1.93
62681--62715
11
3.2
11
83
0
52
80
14
2
2
0.95
66360--66396
19
2.0
19
94
5
67
62
0
0
37
0.96
66697--66743
2
23.5
2
100
0
94
51
0
0
48
1.00

Tables:   1

The End!