Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001547.1 Corchorus olitorius cultivar O-4 contig01547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29


Found at i:547 original size:15 final size:17

Alignment explanation


    Indices: 521--553  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        511 CGGAATGTGA

                             
        521 GTTTAGTTTGTA-ATTT
          1 GTTTAGTTTGTATATTT

                             
        537 GTTTA-TTTGTATATTT
          1 GTTTAGTTTGTATATTT

             
        553 G
          1 G

        554 GTAGGTAGAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    6  0.38
  16   10  0.62

ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64


Consensus pattern (17 bp):   
GTTTAGTTTGTATATTT

Done.