Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015476.1 Corchorus olitorius cultivar O-4 contig15509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39387

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18--68
25
2.0
25
84
0
66
19
21
37
21
1.95
2575--2608
17
1.9
18
88
5
52
2
0
14
82
0.79
4214--4245
16
2.0
16
100
0
64
25
25
12
37
1.91
5030--5616
294
2.0
293
90
0
933
24
16
17
41
1.89
7564--7588
10
2.5
10
100
0
50
0
12
8
80
0.92
8139--8232
45
2.2
43
88
7
138
37
22
6
34
1.80
9218--9279
28
2.5
22
80
19
70
50
3
0
46
1.17
9241--9278
20
1.9
20
88
0
58
50
2
0
47
1.15
14211--14244
14
2.4
14
95
0
59
23
8
0
67
1.18
14272--14302
15
2.1
15
100
0
62
19
6
12
61
1.53
16194--16234
21
1.9
22
85
5
57
9
17
29
43
1.80
17095--17230
46
3.0
46
100
0
272
56
11
19
13
1.66
17143--17219
23
3.1
27
60
33
64
55
12
16
14
1.69
21593--21622
13
2.3
13
94
0
51
56
16
3
23
1.55
22635--22685
16
3.3
15
75
20
52
1
23
0
74
0.92
31990--32016
2
13.5
2
100
0
54
48
0
0
51
1.00
36669--36710
20
2.0
21
86
4
59
23
21
16
38
1.93

Tables:   1

The End!