Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015479.1 Corchorus olitorius cultivar O-4 contig15512, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8030
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:2036 original size:13 final size:13

Alignment explanation


    Indices: 2018--2042  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2008 TACCAGATCA

                         
       2018 AAAAAAATAAAAT
          1 AAAAAAATAAAAT

                        
       2031 AAAAAAATAAAA
          1 AAAAAAATAAAA

       2043 CGAGAACATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12


Consensus pattern (13 bp):   
AAAAAAATAAAAT
Done.