Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015486.1 Corchorus olitorius cultivar O-4 contig15519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16666
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Found at i:6344 original size:2 final size:2
Alignment explanation
Indices: 6339--6363 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6329 ATATATATAT
6339 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
6364 ATCAAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:6698 original size:22 final size:22
Alignment explanation
Indices: 6673--6719 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
6663 CCTTATAAAC
*
6673 TTTTGATGAT-ATTCCTATGAAA
1 TTTTGATAATGATT-CTATGAAA
*
6695 TTTTGATAATGATTCTATGCAA
1 TTTTGATAATGATTCTATGAAA
6717 TTT
1 TTT
6720 CTAAAACCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (22 bp):
TTTTGATAATGATTCTATGAAA
Found at i:6869 original size:22 final size:22
Alignment explanation
Indices: 6754--6877 Score: 101
Period size: 22 Copynumber: 5.6 Consensus size: 22
6744 AGAACTTCCC
* *
6754 TAAAATTTTGTTAACCTCCCTA
1 TAAAATTTTGATAACCTCACTA
* * * * *
6776 TAGAATTTTGAAAACATTAATA
1 TAAAATTTTGATAACCTCACTA
*
6798 TAAAATTTTGATGACCTC-CTAA
1 TAAAATTTTGATAACCTCACT-A
* *
6820 TGAAATTTTGATAACCATCCAC-G
1 TAAAATTTTGATAACC-T-CACTA
*
6843 T-AAATTTTGATAACCGCACTA
1 TAAAATTTTGATAACCTCACTA
6864 TAAAATTTTGATAA
1 TAAAATTTTGATAA
6878 TCTCCATGTG
Statistics
Matches: 78, Mismatches: 18, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
20 3 0.04
21 2 0.03
22 69 0.88
23 2 0.03
24 1 0.01
25 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (22 bp):
TAAAATTTTGATAACCTCACTA
Found at i:6891 original size:22 final size:21
Alignment explanation
Indices: 6820--6891 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
6810 GACCTCCTAA
*
6820 TGAAATTTTGATAACCATCCACG
1 TGAAATTTTGATAA-C-TCCATG
*
6843 T-AAATTTTGATAAC-CGCACTA
1 TGAAATTTTGATAACTC-CA-TG
*
6864 TAAAATTTTGATAATCTCCATG
1 TGAAATTTTGATAA-CTCCATG
6886 TGAAAT
1 TGAAAT
6892 GTTGGTAAGC
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
19 1 0.03
20 2 0.05
21 2 0.05
22 30 0.75
23 4 0.10
24 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (21 bp):
TGAAATTTTGATAACTCCATG
Found at i:6916 original size:44 final size:44
Alignment explanation
Indices: 6819--6916 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 44
6809 TGACCTCCTA
* *
6819 ATGAAATTTTGATAACCATCCACGTAAATTTTGATAACCGCACT
1 ATGAAATTTTGATAACCATCCACGTAAATGTTGATAACCACACT
* * * * *
6863 ATAAAATTTTGATAATC-TCCATGTGAAATGTTGGTAAGCACACT
1 ATGAAATTTTGATAACCATCCACGT-AAATGTTGATAACCACACT
*
6907 ATGATATTTT
1 ATGAAATTTT
6917 TTATAACCTC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 6 0.14
44 38 0.86
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (44 bp):
ATGAAATTTTGATAACCATCCACGTAAATGTTGATAACCACACT
Found at i:7283 original size:23 final size:23
Alignment explanation
Indices: 7257--7316 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 23
7247 AGACATTCAT
*
7257 ATAAAATTTTGATAAATCTCCCA
1 ATAAAATTTTGATAAACCTCCCA
* **
7280 ATAAATTTTTGA-AAACCTCCTT
1 ATAAAATTTTGATAAACCTCCCA
*
7302 ATGAAATTTTGATAA
1 ATAAAATTTTGATAA
7317 TCACAAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 17 0.57
23 13 0.43
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (23 bp):
ATAAAATTTTGATAAACCTCCCA
Found at i:7288 original size:22 final size:23
Alignment explanation
Indices: 7234--7316 Score: 64
Period size: 23 Copynumber: 3.7 Consensus size: 23
7224 TGACCTCGGT
* * *
7234 ATGAAATTTTGATAGACAT-TCA
1 ATGAAATTTTGATAAACCTCCCA
* *
7256 TATAAAATTTTGATAAATCTCCCA
1 -ATGAAATTTTGATAAACCTCCCA
**
7280 AT-AAATTTTTGA-AAACCTCCTT
1 ATGAAA-TTTTGATAAACCTCCCA
7302 ATGAAATTTTGATAA
1 ATGAAATTTTGATAA
7317 TCACAAATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
22 18 0.38
23 28 0.58
24 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (23 bp):
ATGAAATTTTGATAAACCTCCCA
Found at i:7455 original size:22 final size:22
Alignment explanation
Indices: 7430--7486 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
7420 TAAAGTATGG
*
7430 AATTTTGAT-ATCCTCCCTATAA
1 AATTTTAATAATCC-CCCTATAA
* *
7452 AATTTTAATAATCCCCCTTTGA
1 AATTTTAATAATCCCCCTATAA
7474 AATTTTAATAATC
1 AATTTTAATAATC
7487 TTCATACGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 27 0.87
23 4 0.13
ACGTcount: A:0.35, C:0.19, G:0.04, T:0.42
Consensus pattern (22 bp):
AATTTTAATAATCCCCCTATAA
Found at i:7734 original size:22 final size:22
Alignment explanation
Indices: 7616--7766 Score: 103
Period size: 22 Copynumber: 6.9 Consensus size: 22
7606 GCTAACCGCT
* *
7616 CTATAAAATTTTGATAATCAT-A
1 CTATAAAATTTTGATAA-CCTCG
*
7638 CTATGAAA-TTTGA-AACCTC-
1 CTATAAAATTTTGATAACCTCG
* * *
7657 CATATAAAATTTTAATAACCACA
1 C-TATAAAATTTTGATAACCTCG
* * * *
7680 ATATGAAAATCTTTCATAACTTCA
1 CTAT-AAAAT-TTTGATAACCTCG
**
7704 CTAGGAAATTTTGATAACCTCG
1 CTATAAAATTTTGATAACCTCG
* **
7726 CTTTAAAATTTTGATAACCTTT
1 CTATAAAATTTTGATAACCTCG
7748 CTATAAAATTTTGATAACC
1 CTATAAAATTTTGATAACC
7767 ACATTATGAT
Statistics
Matches: 101, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
19 3 0.03
20 8 0.08
21 9 0.09
22 60 0.59
23 9 0.09
24 12 0.12
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (22 bp):
CTATAAAATTTTGATAACCTCG
Found at i:7942 original size:22 final size:22
Alignment explanation
Indices: 7917--8142 Score: 158
Period size: 22 Copynumber: 10.1 Consensus size: 22
7907 TAGATTTTTC
* *
7917 TAACATTACTATGAAATTTTGG
1 TAACATCACTATGAAATTTTGA
7939 TAACCA-CACTATGAAATCTTTGA
1 TAA-CATCACTATGAAAT-TTTGA
* * *
7962 TAGCCA-CGCTATGAAATTCTGA
1 TA-ACATCACTATGAAATTTTGA
* * *
7984 TAACCTCGCTATGGAATTTTGA
1 TAACATCACTATGAAATTTTGA
* *
8006 TAACCTCCCTATGAAATTTTGA
1 TAACATCACTATGAAATTTTGA
8028 TAACCA-CACTATGAAATTTTGA
1 TAA-CATCACTATGAAATTTTGA
* *
8050 TAACTTTC-CTATGAAATTTTAA
1 TAAC-ATCACTATGAAATTTTGA
*
8072 TAACCTATCCAC-ATGAAATGTTGA
1 TAA-C-AT-CACTATGAAATTTTGA
* *
8096 TAACCA-CACTGTGAAATTTTGG
1 TAA-CATCACTATGAAATTTTGA
* * * *
8118 TTACCTCAGTGTGAAATTTTGA
1 TAACATCACTATGAAATTTTGA
8140 TAA
1 TAA
8143 TCACAGTATA
Statistics
Matches: 166, Mismatches: 26, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
21 6 0.04
22 117 0.70
23 26 0.16
24 16 0.10
25 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (22 bp):
TAACATCACTATGAAATTTTGA
Found at i:8020 original size:44 final size:44
Alignment explanation
Indices: 7925--8142 Score: 213
Period size: 44 Copynumber: 4.9 Consensus size: 44
7915 TCTAACATTA
* * * *
7925 CTATGAAATTTTGGTAACCACACTATGAAATCTTTGATAGCCACG
1 CTATGAAATTTTGATAACCACACTATGAAAT-TTTGATAACCTCC
* * * *
7970 CTATGAAATTCTGATAACCTCGCTATGGAATTTTGATAACCTCC
1 CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTCC
* *
8014 CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACTTTC
1 CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTCC
* * * *
8058 CTATGAAATTTTAATAACCTATCCAC-ATGAAATGTTGATAACCACA
1 CTATGAAATTTTGATAACC-A--CACTATGAAATTTTGATAACCTCC
* * * * * *
8104 CTGTGAAATTTTGGTTACCTCAGTGTGAAATTTTGATAA
1 CTATGAAATTTTGATAACCACACTATGAAATTTTGATAA
8143 TCACAGTATA
Statistics
Matches: 141, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
43 2 0.01
44 79 0.56
45 27 0.19
46 30 0.21
47 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (44 bp):
CTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTCC
Found at i:8062 original size:66 final size:66
Alignment explanation
Indices: 7925--8142 Score: 235
Period size: 68 Copynumber: 3.3 Consensus size: 66
7915 TCTAACATTA
* * * * * *
7925 CTATGAAATTTTGGTAACCACACTATGAAATCTTTGATAGCCACGCTATGAAATTCTGATAACCT
1 CTATGAAATTTTGATAACCTCCCTATGAAAT-TTTGATAACCACACTATGAAATTTTGATAACCT
7990 CG
65 CG
* *
7992 CTATGGAATTTTGATAACCTCCCTATGAAATTTTGATAACCACACTATGAAATTTTGATAACTTT
1 CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACCACACTATGAAATTTTGATAAC-CT
8057 C-
65 CG
* * * * *
8058 CTATGAAATTTTAATAACCTATCCAC-ATGAAATGTTGATAACCACACTGTGAAATTTTGGTTAC
1 CTATGAAATTTTGATAACC--TCC-CTATGAAATTTTGATAACCACACTATGAAATTTTGATAAC
8122 CTCAG
63 CTC-G
*
8127 -TGTGAAATTTTGATAA
1 CTATGAAATTTTGATAA
8143 TCACAGTATA
Statistics
Matches: 128, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
66 45 0.35
67 31 0.24
68 51 0.40
69 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (66 bp):
CTATGAAATTTTGATAACCTCCCTATGAAATTTTGATAACCACACTATGAAATTTTGATAACCTC
G
Found at i:8137 original size:68 final size:68
Alignment explanation
Indices: 7925--8116 Score: 200
Period size: 66 Copynumber: 2.9 Consensus size: 68
7915 TCTAACATTA
** * * * *
7925 CTATGAAATTTTGGTAACC-A--CACTATGAAATCTTTGATAGCCACGCTATGAAATTCTGATAA
1 CTATGAAATTTTAATAACCTATCCAC-ATGAAAT-GTTGATAACCACACTATGAAATTTTGATAA
7987 C-CTC
64 CTCTC
* * *
7991 GCTATGGAATTTTGATAACC--TCC-CTATGAAATTTTGATAACCACACTATGAAATTTTGATAA
1 -CTATGAAATTTTAATAACCTATCCAC-ATGAAATGTTGATAACCACACTATGAAATTTTGATAA
*
8053 CTTTC
64 CTCTC
*
8058 CTATGAAATTTTAATAACCTATCCACATGAAATGTTGATAACCACACTGTGAAATTTTG
1 CTATGAAATTTTAATAACCTATCCACATGAAATGTTGATAACCACACTATGAAATTTTG
8117 GTTACCTCAG
Statistics
Matches: 109, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
66 45 0.41
67 28 0.26
68 35 0.32
69 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (68 bp):
CTATGAAATTTTAATAACCTATCCACATGAAATGTTGATAACCACACTATGAAATTTTGATAACT
CTC
Found at i:14525 original size:22 final size:22
Alignment explanation
Indices: 14352--14581 Score: 177
Period size: 22 Copynumber: 10.6 Consensus size: 22
14342 CTCCAATGTA
*
14352 GAAATATTGATAACCACAC--T
1 GAAATTTTGATAACCACACTAT
* * *
14372 GAAAATTTGATAACCTCATTAT
1 GAAATTTTGATAACCACACTAT
* * *
14394 -AGAATTTCGATAACCTCCCTAT
1 GA-AATTTTGATAACCACACTAT
* *
14416 GAAAGTTTGATAACCACACTGT
1 GAAATTTTGATAACCACACTAT
14438 GAAATTTTGATAACCACACTAT
1 GAAATTTTGATAACCACACTAT
* * *
14460 GAAATTTTGATAACCTCAGTGT
1 GAAATTTTGATAACCACACTAT
* * *
14482 GAAATTTTGATAATCTCCCTAT
1 GAAATTTTGATAACCACACTAT
* *
14504 GAAATTTTGATAATCAAACTAT
1 GAAATTTTGATAACCACACTAT
* ***
14526 -AAA-ATTG-TAACCGTGCTAT
1 GAAATTTTGATAACCACACTAT
*
14545 GAAAATTTTGATAAACACAAC-AT
1 G-AAATTTTGATAACCAC-ACTAT
*
14568 GAAATTTCGATAAC
1 GAAATTTTGATAAC
14582 GTCTCTATGA
Statistics
Matches: 164, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
19 8 0.05
20 18 0.11
21 7 0.04
22 122 0.74
23 8 0.05
24 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.32
Consensus pattern (22 bp):
GAAATTTTGATAACCACACTAT
Found at i:14655 original size:22 final size:21
Alignment explanation
Indices: 14620--14704 Score: 84
Period size: 22 Copynumber: 4.0 Consensus size: 21
14610 TGATATCCTC
* *
14620 CTCTCTATGTAATTTTGATAA
1 CTCTCCATGAAATTTTGATAA
*
14641 CTTCTCCATGAAATTTTCATAA
1 C-TCTCCATGAAATTTTGATAA
*
14663 C-CTCCCTATGAAATTTTGTTAA
1 CTCT-CC-ATGAAATTTTGATAA
*
14685 C-CTCCAGGAAATTTTGATAA
1 CTCTCCATGAAATTTTGATAA
14705 GCACGAATAT
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 15 0.28
21 5 0.09
22 34 0.63
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (21 bp):
CTCTCCATGAAATTTTGATAA
Found at i:14697 original size:20 final size:20
Alignment explanation
Indices: 14630--14704 Score: 87
Period size: 22 Copynumber: 3.5 Consensus size: 20
14620 CTCTCTATGT
14630 AATTTTGATAACTTCTCCATGA
1 AATTTTGATAAC--CTCCATGA
*
14652 AATTTTCATAACCTCCCTATGA
1 AATTTTGATAACCT-CC-ATGA
* *
14674 AATTTTGTTAACCTCCAGGA
1 AATTTTGATAACCTCCATGA
14694 AATTTTGATAA
1 AATTTTGATAA
14705 GCACGAATAT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
20 15 0.33
21 4 0.09
22 27 0.59
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
AATTTTGATAACCTCCATGA
Found at i:14698 original size:42 final size:43
Alignment explanation
Indices: 14619--14704 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
14609 GTGATATCCT
* * *
14619 CCTCTCTATGTAATTTTGATAACTTCTCCATGAAATTTTCATAA
1 CCTCCCTATGAAATTTTGATAAC-TCTCCAGGAAATTTTCATAA
* *
14663 CCTCCCTATGAAATTTTGTTAAC-CTCCAGGAAATTTTGATAA
1 CCTCCCTATGAAATTTTGATAACTCTCCAGGAAATTTTCATAA
14705 GCACGAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 17 0.46
44 20 0.54
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.40
Consensus pattern (43 bp):
CCTCCCTATGAAATTTTGATAACTCTCCAGGAAATTTTCATAA
Found at i:14762 original size:22 final size:21
Alignment explanation
Indices: 14732--14813 Score: 58
Period size: 22 Copynumber: 3.8 Consensus size: 21
14722 CTCCCTCCCA
* * *
14732 ATGATATTTTGTTAACATTCTT
1 ATGAAATTTTGATAAC-TTCCT
*
14754 ATGAAATTTTGATAACTACACT
1 ATGAAATTTTGATAACTTC-CT
*
14776 AT-AAACTTTTGATAACCTTCGT
1 ATGAAA-TTTTGATAA-CTTCCT
* *
14798 ACGAAATTTTGTTAAC
1 ATGAAATTTTGATAAC
14814 CTCCCTAAGA
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
21 6 0.12
22 36 0.75
23 6 0.12
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (21 bp):
ATGAAATTTTGATAACTTCCT
Found at i:15508 original size:21 final size:20
Alignment explanation
Indices: 15468--15515 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
15458 CATTTTTTAA
* *
15468 TATAATGTTATTAAAGAAGT
1 TATAATGTTATCAAAAAAGT
15488 TATAATGATTATCAAAAAAGT
1 TATAATG-TTATCAAAAAAGT
15509 TATAATG
1 TATAATG
15516 GTATATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 7 0.28
21 18 0.72
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (20 bp):
TATAATGTTATCAAAAAAGT
Found at i:15793 original size:36 final size:36
Alignment explanation
Indices: 15745--15813 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
15735 AATGTATAAT
*
15745 TTTTTTTTTTACAAATGAACTAAAGAAAAATAAATC
1 TTTTTTTGTTACAAATGAACTAAAGAAAAATAAATC
15781 TTTTTTTGTTACAAATGAACTAAAGAAAAATAA
1 TTTTTTTGTTACAAATGAACTAAAGAAAAATAA
15814 GTTTGGCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (36 bp):
TTTTTTTGTTACAAATGAACTAAAGAAAAATAAATC
Found at i:16502 original size:42 final size:41
Alignment explanation
Indices: 16441--16555 Score: 135
Period size: 42 Copynumber: 2.8 Consensus size: 41
16431 TTTAATTATT
* *
16441 TTTAAAATATATTTCCATAATTCAAAAAAAAATTAAGATA-GA
1 TTTAAAATATCTTTCCATAATT-AATAAAAAATTAA-ATATGA
* *
16483 TTTAAAATATCTTTTCATAATT-TTAAAAAATTAAATATTGGA
1 TTTAAAATATCTTTCCATAATTAATAAAAAATTAAATA-T-GA
*
16525 TTTACAATATCTTTCCATAATTAATAAAAAA
1 TTTAAAATATCTTTCCATAATTAATAAAAAA
16556 GTTGAATGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
39 3 0.05
40 10 0.16
42 42 0.68
43 7 0.11
ACGTcount: A:0.50, C:0.08, G:0.03, T:0.39
Consensus pattern (41 bp):
TTTAAAATATCTTTCCATAATTAATAAAAAATTAAATATGA
Done.