Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015487.1 Corchorus olitorius cultivar O-4 contig15520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17743

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1147--1376
22
10.6
22
74
7
168
39
16
12
32
1.86
1400--1496
22
4.5
22
80
2
99
30
18
10
40
1.84
1411--1496
44
2.0
43
84
4
111
30
20
9
39
1.84
1524--1605
22
3.8
21
73
13
58
34
12
10
42
1.77
1818--1936
22
5.4
22
75
13
102
34
14
10
41
1.79
1818--1938
44
2.8
44
81
7
138
33
14
10
41
1.80
2544--2602
31
1.9
30
86
10
84
40
15
6
37
1.74
2544--2641
30
3.2
30
78
11
92
42
15
6
35
1.72
3619--3678
21
2.9
20
82
7
75
50
3
11
35
1.56
5035--5061
13
2.1
13
100
0
54
22
22
22
33
1.97
6729--6801
25
2.9
25
83
0
101
35
15
36
12
1.84
6945--7032
32
2.8
32
94
0
149
19
21
9
50
1.75
10209--10553
178
1.9
178
86
5
484
33
13
17
35
1.89
16305--16343
5
8.6
5
78
21
50
23
20
0
56
1.42
16305--16349
21
2.1
21
88
8
65
24
20
0
55
1.43
17552--17585
14
2.4
14
90
0
50
23
11
0
64
1.26
17613--17643
15
2.1
15
100
0
62
19
6
12
61
1.53

Tables:   1

The End!