Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015488.1 Corchorus olitorius cultivar O-4 contig15521, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31181
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:2593 original size:2 final size:2
Alignment explanation
Indices: 2586--2614 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2576 ACTCAAAACC
2586 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2615 GACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3069 original size:22 final size:22
Alignment explanation
Indices: 3044--3648 Score: 230
Period size: 22 Copynumber: 27.1 Consensus size: 22
3034 ACCAAAATCA
*
3044 CATAGGAAGGTTATTAAAATTT
1 CATAGGAAGGTTATCAAAATTT
* * *
3066 CATAATG-TGGTTACCAAAATTT
1 CAT-AGGAAGGTTATCAAAATTT
*
3088 CATATGG-AGGTTATCAAACTTT
1 CATA-GGAAGGTTATCAAAATTT
*
3110 CATAGTGTA-GTTATCAAAATTT
1 CATAG-GAAGGTTATCAAAATTT
* *
3132 CATA-TAGAGGTTACCAAAATTT
1 CATAGGA-AGGTTATCAAAATTT
**
3154 CATAAAAAGGTTATCAAAATTT
1 CATAGGAAGGTTATCAAAATTT
* *
3176 CTTAGGGAGGTTATCAAAATTT
1 CATAGGAAGGTTATCAAAATTT
**
3198 CATAGGAAGGTTATTGAAATTT
1 CATAGGAAGGTTATCAAAATTT
* * * *
3220 TATAGTG-TGATTATCAAAATTA
1 CATAG-GAAGGTTATCAAAATTT
* * *
3242 AATA-GAACGTTAACAAAATTT
1 CATAGGAAGGTTATCAAAATTT
3263 CATAAGGAGGGAGGTTATCAAAATTT
1 CAT-AGGA---AGGTTATCAAAATTT
* * *
3289 CCTAGGAAGGTTAACAAAACTT
1 CATAGGAAGGTTATCAAAATTT
* *
3311 CATA-GAGAGGTTATGAAATGTTAT
1 CATAGGA-AGGTTATCAAA-ATT-T
* * *
3335 GGAGAGGAGAGGTTATCAAAATTA
1 -CATAGGA-AGGTTATCAAAATTT
* *
3359 CATA-TAGAGGATATCACAATTTCATTCT
1 CATAGGA-AGGTTATCA-AA----ATT-T
* *
3387 CATGGGGAA-GTTATCGAAATTT
1 CAT-AGGAAGGTTATCAAAATTT
*
3409 CA-AGG-TGTCGTTATCAAAATTT
1 CATAGGAAG--GTTATCAAAATTT
*
3431 --TATG-AGGTTATCAAAATTT
1 CATAGGAAGGTTATCAAAATTT
*
3450 TATGAGG-AGGTTATCAAAATTTT
1 CAT-AGGAAGGTTATCAAAA-TTT
* * *
3473 CATATTG-CGATTA-C-AAATTT
1 CATA-GGAAGGTTATCAAAATTT
* *
3493 TATA--ATGTGATTATCAAAATTT
1 CATAGGAAG-G-TTATCAAAATTT
* *
3515 CATAGGGAGATTATCAAAATTT
1 CATAGGAAGGTTATCAAAATTT
* **
3537 CACACTAAGGTTATCAAAATTT
1 CATAGGAAGGTTATCAAAATTT
* * * *
3559 CATTGTG-TGGATATCAGAATTT
1 CATAG-GAAGGTTATCAAAATTT
* * * *
3581 CACAGTG-TGGTTATTAAATTTT
1 CATAG-GAAGGTTATCAAAATTT
* *
3603 CATAGGGAGGTTATCGAAATTT
1 CATAGGAAGGTTATCAAAATTT
* * *
3625 CACAATG-AGGTTATCAAATTTT
1 CA-TAGGAAGGTTATCAAAATTT
3647 CA
1 CA
3649 CAATGTGTGG
Statistics
Matches: 434, Mismatches: 103, Indels: 92
0.69 0.16 0.15
Matches are distributed among these distances:
18 1 0.00
19 13 0.03
20 12 0.03
21 26 0.06
22 302 0.70
23 27 0.06
24 2 0.00
25 8 0.02
26 28 0.06
27 5 0.01
28 8 0.02
29 1 0.00
30 1 0.00
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (22 bp):
CATAGGAAGGTTATCAAAATTT
Found at i:3208 original size:44 final size:44
Alignment explanation
Indices: 3044--3648 Score: 282
Period size: 44 Copynumber: 13.5 Consensus size: 44
3034 ACCAAAATCA
* * * * *
3044 CATAGGAAGGTTATTAAAATTTCATAATG-TGGTTACCAAAATTT
1 CATAGGGAGGTTATCAAAATTTCAT-AGGAAGGTTATCAAAATTT
* * *
3088 CATATGGAGGTTATCAAACTTTCATAGTGTA-GTTATCAAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTT
** * **
3132 CATATAGAGGTTACCAAAATTTCATAAAAAGGTTATCAAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* **
3176 CTTAGGGAGGTTATCAAAATTTCATAGGAAGGTTATTGAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* * * * ** * *
3220 TATAGTGTGATTATCAAAATTAAATA-GAACGTTAACAAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* * *
3263 CATAAGGAGGGAGGTTATCAAAATTTCCTAGGAAGGTTAACAAAACTT
1 CAT----AGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* * * * * *
3311 CATAGAGAGGTTATGAAATGTTATGGAGAGGAGAGGTTATCAAAATTA
1 CATAGGGAGGTTATCAAA-ATT-T-CATAGGA-AGGTTATCAAAATTT
** * * *
3359 CATATAGAGGATATCACAATTTCATTCTCATGGGGAA-GTTATCGAAATTT
1 CATAGGGAGGTTATCA-AA----ATT-TCAT-AGGAAGGTTATCAAAATTT
** *
3409 CA-AGGTGTCGTTATCAAAATTT--TATG-AGGTTATCAAAATTT
1 CATAGG-GAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* * * *
3450 TAT-GAGGAGGTTATCAAAATTTTCATATTG-CGATTA-C-AAATTT
1 CATAG-GGAGGTTATCAAAA-TTTCATA-GGAAGGTTATCAAAATTT
* ** * * * *
3493 TATAATGTGATTATCAAAATTTCATAGGGAGATTATCAAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* *** * * * *
3537 CACACTAAGGTTATCAAAATTTCATTGTG-TGGATATCAGAATTT
1 CATAGGGAGGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTT
* * * * * * *
3581 CACAGTGTGGTTATTAAATTTTCATAGGGAGGTTATCGAAATTT
1 CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
* ** *
3625 CACAATGAGGTTATCAAATTTTCA
1 CATAGGGAGGTTATCAAAATTTCA
3649 CAATGTGTGG
Statistics
Matches: 426, Mismatches: 104, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
40 1 0.00
41 27 0.06
42 17 0.04
43 39 0.09
44 232 0.54
45 12 0.03
46 1 0.00
47 21 0.05
48 43 0.10
49 5 0.01
50 20 0.05
51 2 0.00
52 6 0.01
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (44 bp):
CATAGGGAGGTTATCAAAATTTCATAGGAAGGTTATCAAAATTT
Found at i:4736 original size:74 final size:74
Alignment explanation
Indices: 4615--4762 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
4605 TAGCATCCAT
* *
4615 TGTTGATGAAATTGTTAACTAATGAAAAATTACTGATTTTGTTGGTTCACGTATATTTTTTGATA
1 TGTTGATGAAATTGTTAACTAATGAAAAATTACTGAATTTGTTGGTTCACGTATAGTTTTTGATA
4680 CTATATATA
66 CTATATATA
4689 TGTTGATGAAATTGTTAACTAATGAAAAATTACTGAATTTGTTGGTTCACGTATAGTTTTTGATA
1 TGTTGATGAAATTGTTAACTAATGAAAAATTACTGAATTTGTTGGTTCACGTATAGTTTTTGATA
4754 CTATATATA
66 CTATATATA
4763 ACTTTTCAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.45
Consensus pattern (74 bp):
TGTTGATGAAATTGTTAACTAATGAAAAATTACTGAATTTGTTGGTTCACGTATAGTTTTTGATA
CTATATATA
Found at i:5625 original size:40 final size:40
Alignment explanation
Indices: 5581--5660 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
5571 TTTCACATAA
* * *
5581 ATGTTATGATAAATCCTATCCCCTTTAATTATCTAGAATT
1 ATGTTATAATAAATCATATCCCCCTTAATTATCTAGAATT
5621 ATGTTATAATAAATCATATCCCCCTTAATTATCTAGAATT
1 ATGTTATAATAAATCATATCCCCCTTAATTATCTAGAATT
5661 GTAACCTCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.06, T:0.41
Consensus pattern (40 bp):
ATGTTATAATAAATCATATCCCCCTTAATTATCTAGAATT
Found at i:8754 original size:22 final size:22
Alignment explanation
Indices: 8724--8888 Score: 144
Period size: 22 Copynumber: 7.5 Consensus size: 22
8714 AAAAATCATA
*
8724 TTATAAAAATTTCATATGAAGG
1 TTATCAAAATTTCATATGAAGG
8746 TTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATATGAAGG
*
8768 TTATCAAAATTTCATAGTGTA-G
1 TTATCAAAATTTCATA-TGAAGG
* * * *
8790 TTATCAGAATTTTATAGGGAGG
1 TTATCAAAATTTCATATGAAGG
* *
8812 TTATCAAAATTTCGA-AGTG-TGT
1 TTATCAAAATTTC-ATA-TGAAGG
* *
8834 TTATCAAAAATTCATA-CAGAGG
1 TTATCAAAATTTCATATGA-AGG
*
8856 TTATCAAAATTTCAT-TAGGAGG
1 TTATCAAAATTTCATAT-GAAGG
8878 -TATCAAAATTT
1 TTATCAAAATTT
8889 TATAGCGTGA
Statistics
Matches: 116, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
21 14 0.12
22 97 0.84
23 5 0.04
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (22 bp):
TTATCAAAATTTCATATGAAGG
Found at i:8793 original size:44 final size:43
Alignment explanation
Indices: 8724--8893 Score: 161
Period size: 44 Copynumber: 3.9 Consensus size: 43
8714 AAAAATCATA
* *
8724 TTATAAAAATTTCATA-TGAAGGTTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATAGTGTA-GTTATCAAAATTTCATA-GAAGG
* * *
8768 TTATCAAAATTTCATAGTGTAGTTATCAGAATTTTATAGGGAGG
1 TTATCAAAATTTCATAGTGTAGTTATCAAAATTTCATA-GAAGG
* *
8812 TTATCAAAATTTCGA-AGTGT-GTTTATCAAAAATTCATACAGAGG
1 TTATCAAAATTTC-ATAGTGTAG-TTATCAAAATTTCATAGA-AGG
* *
8856 TTATCAAAATTTCATTAG-G-AGGTATCAAAATTTTATAG
1 TTATCAAAATTTCA-TAGTGTAGTTATCAAAATTTCATAG
8894 CGTGATTATC
Statistics
Matches: 104, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 15 0.14
44 83 0.80
45 6 0.06
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (43 bp):
TTATCAAAATTTCATAGTGTAGTTATCAAAATTTCATAGAAGG
Found at i:8838 original size:66 final size:66
Alignment explanation
Indices: 8724--8888 Score: 162
Period size: 66 Copynumber: 2.5 Consensus size: 66
8714 AAAAATCATA
* * * **
8724 TTATAAAAATTTCA-TATGAAGGTTATCAAAATTTCATATGAAGGTTATCAAAATTTCATAGTGT
1 TTATCAAAATTTCATTA-GGAGGTTATCAAAATTTCATATGAAGGTTATCAAAAATTCATACAG-
8788 A-G
64 AGG
* * * *
8790 TTATCAGAATTTTA-TAGGGAGGTTATCAAAATTTCGA-AGTG-TGTTTATCAAAAATTCATACA
1 TTATCAAAATTTCATTA-GGAGGTTATCAAAATTTC-ATA-TGAAGGTTATCAAAAATTCATACA
8852 GAGG
63 GAGG
8856 TTATCAAAATTTCATTAGGAGG-TATCAAAATTT
1 TTATCAAAATTTCATTAGGAGGTTATCAAAATTT
8889 TATAGCGTGA
Statistics
Matches: 83, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
65 12 0.14
66 66 0.80
67 5 0.06
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.37
Consensus pattern (66 bp):
TTATCAAAATTTCATTAGGAGGTTATCAAAATTTCATATGAAGGTTATCAAAAATTCATACAGAG
G
Found at i:8906 original size:22 final size:22
Alignment explanation
Indices: 8723--8907 Score: 105
Period size: 22 Copynumber: 8.5 Consensus size: 22
8713 TAAAAATCAT
* *
8723 ATTATAAAAATTTCATATG-AAG
1 ATTATCAAAATTTCATA-GCGAG
* *
8745 GTTATCAAAATTTCATATG-AAG
1 ATTATCAAAATTTCATA-GCGAG
* *
8767 GTTATCAAAATTTCATAGTGTAG
1 ATTATCAAAATTTCATAGCG-AG
* * *
8790 -TTATCAGAATTTTATAGGGAG
1 ATTATCAAAATTTCATAGCGAG
* * *
8811 GTTATCAAAATTTCGA-AGTGTG
1 ATTATCAAAATTTC-ATAGCGAG
* *
8833 TTTATCAAAAATTCATA-CAGAG
1 ATTATCAAAATTTCATAGC-GAG
*
8855 GTTATCAAAATTTCATTAG-GAG
1 ATTATCAAAATTTCA-TAGCGAG
* * *
8877 -GTATCAAAATTTTATAGCGTG
1 ATTATCAAAATTTCATAGCGAG
8898 ATTATCAAAA
1 ATTATCAAAA
8908 GAGAGTGGTA
Statistics
Matches: 133, Mismatches: 20, Indels: 20
0.77 0.12 0.12
Matches are distributed among these distances:
20 3 0.02
21 18 0.14
22 107 0.80
23 5 0.04
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (22 bp):
ATTATCAAAATTTCATAGCGAG
Found at i:8981 original size:22 final size:22
Alignment explanation
Indices: 8935--9004 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
8925 GGGAGGTTAT
* * * *
8935 CAAAATTTCATAGTGTGGATAC
1 CAAAATTTCATAGTTTAGTTTC
8957 CAAAATTTCATAGTTTAGTTTC
1 CAAAATTTCATAGTTTAGTTTC
* * *
8979 CAAATTTTCATAGTTAAGTTTT
1 CAAAATTTCATAGTTTAGTTTC
9001 CAAA
1 CAAA
9005 CTATGAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (22 bp):
CAAAATTTCATAGTTTAGTTTC
Found at i:9105 original size:22 final size:22
Alignment explanation
Indices: 9062--9151 Score: 78
Period size: 22 Copynumber: 4.2 Consensus size: 22
9052 CACTATGAAA
** * *
9062 TTTGATAACCGCCTTATGAAAT
1 TTTGATAACCTTCATATAAAAT
*
9084 TTTTATAACCTTCATATAAAAT
1 TTTGATAACCTTCATATAAAAT
* *
9106 TTTGGTAACC-ACA-ATGAAAA-
1 TTTGATAACCTTCATAT-AAAAT
*
9126 TTTGATAACCTTCATATGAAAT
1 TTTGATAACCTTCATATAAAAT
9148 TTTG
1 TTTG
9152 GTAATTACAT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
20 11 0.21
21 11 0.21
22 31 0.58
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (22 bp):
TTTGATAACCTTCATATAAAAT
Found at i:9124 original size:42 final size:43
Alignment explanation
Indices: 9076--9204 Score: 143
Period size: 42 Copynumber: 3.0 Consensus size: 43
9066 ATAACCGCCT
*
9076 TATGAAATTTTTATAACCTTCATATAAAATTTTGGTAACCACA
1 TATGAAATTTTAATAACCTTCATATAAAATTTTGGTAACCACA
* * * **
9119 -ATGAAAATTTGATAACCTTCATATGAAATTTTGGTAATTACA
1 TATGAAATTTTAATAACCTTCATATAAAATTTTGGTAACCACA
* * * **
9161 TTATGAAATTTCAATAACCTCCTTATAAAATTTAAGTAACCACA
1 -TATGAAATTTTAATAACCTTCATATAAAATTTTGGTAACCACA
9205 CAGAGACAAC
Statistics
Matches: 69, Mismatches: 15, Indels: 3
0.79 0.17 0.03
Matches are distributed among these distances:
42 37 0.54
44 32 0.46
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (43 bp):
TATGAAATTTTAATAACCTTCATATAAAATTTTGGTAACCACA
Found at i:9125 original size:21 final size:23
Alignment explanation
Indices: 9076--9168 Score: 74
Period size: 22 Copynumber: 4.3 Consensus size: 23
9066 ATAACCGCCT
** *
9076 TATG-AAATTTTTATAACCTTCA
1 TATGAAAATTTTGGTAACCTACA
9098 TAT-AAAATTTTGGTAACC-ACA
1 TATGAAAATTTTGGTAACCTACA
* *
9119 -ATGAAAA-TTTGATAACCTTCA
1 TATGAAAATTTTGGTAACCTACA
*
9140 TATG-AAATTTTGGTAA-TTACA
1 TATGAAAATTTTGGTAACCTACA
9161 TTATGAAA
1 -TATGAAA
9169 TTTCAATAAC
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
20 11 0.20
21 14 0.25
22 29 0.52
23 2 0.04
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.39
Consensus pattern (23 bp):
TATGAAAATTTTGGTAACCTACA
Found at i:24470 original size:75 final size:75
Alignment explanation
Indices: 24291--24519 Score: 185
Period size: 75 Copynumber: 3.1 Consensus size: 75
24281 CCCAGTGGTA
* * * *
24291 ATTCTCCTTCTCAGGTTGCTAATTCGAATTCAAATAATGAGTTTGCTGATGGTGTTAGGCAAAAT
1 ATTCACCTTATCAGGTTCCTAATTCGAATTCAAATAATGAGTTTGCTGATGATGTTAGGCAAAAT
*
24356 CTTGAAGTTG
66 CTTGAAGCTG
* * * ** * * * *
24366 ATTCACCTGACCAGATTCCTCTTTTGAATTCAAATACTGAGTTTTCTGATGATGATT-TGCAACA
1 ATTCACCTTATCAGGTTCCTAATTCGAATTCAAATAATGAGTTTGCTGATGATG-TTAGGCAA-A
24430 A-CTTGAAGCTG
64 ATCTTGAAGCTG
* * * ** * * * * **
24441 ATTCACCTTATCAGGTTTCTGATTCGAATTTAAATTTTGAGCATT-ATAATGATGATAGGCAGCA
1 ATTCACCTTATCAGGTTCCTAATTCGAATTCAAATAATGAG-TTTGCTGATGATGTTAGGCAAAA
24505 TCTTGAAGCTG
65 TCTTGAAGCTG
24516 ATTC
1 ATTC
24520 TTCGAATCAG
Statistics
Matches: 118, Mismatches: 31, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
74 2 0.02
75 110 0.93
76 6 0.05
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (75 bp):
ATTCACCTTATCAGGTTCCTAATTCGAATTCAAATAATGAGTTTGCTGATGATGTTAGGCAAAAT
CTTGAAGCTG
Found at i:24567 original size:75 final size:75
Alignment explanation
Indices: 24424--24586 Score: 177
Period size: 75 Copynumber: 2.2 Consensus size: 75
24414 ATGATGATTT
* ** * * *
24424 GCAACAACTTGAAGCTGATTCACCTTATCAGGTTTCTGATTCGAATTTAAATTTTGAGCATTATA
1 GCAACATCTTGAAGCTGATTCACCGAATCAGGATGCTGATTCGAATTTAAATTTTGAGCATTACA
*
24489 ATGATGATAG
66 ATGACGATAG
* ** * *
24499 GCAGCATCTTGAAGCTGATTCTTCGAATCAGGATGCTGTTTCGAATTCT-AATTTTGAGC-TTCC
1 GCAACATCTTGAAGCTGATTCACCGAATCAGGATGCTGATTCGAATT-TAAATTTTGAGCATT-A
24562 CAATGACGATAG
64 CAATGACGATAG
*
24574 GCAACATTTTGAA
1 GCAACATCTTGAA
24587 AATGTTATTG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
74 2 0.03
75 69 0.96
76 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (75 bp):
GCAACATCTTGAAGCTGATTCACCGAATCAGGATGCTGATTCGAATTTAAATTTTGAGCATTACA
ATGACGATAG
Found at i:25108 original size:23 final size:23
Alignment explanation
Indices: 25078--25121 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
25068 TGGAGGAAGA
*
25078 GGGTTAGTGGTGACTGTTTTGAT
1 GGGTTAGTGGTGACTATTTTGAT
25101 GGGTTAGTGGTGACTATTTTG
1 GGGTTAGTGGTGACTATTTTG
25122 GTGCATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.14, C:0.05, G:0.39, T:0.43
Consensus pattern (23 bp):
GGGTTAGTGGTGACTATTTTGAT
Done.