Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015493.1 Corchorus olitorius cultivar O-4 contig15526, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30259

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--431
205
2.0
203
94
0
727
44
8
10
36
1.70
440--514
29
2.6
29
100
0
150
32
16
5
46
1.69
570--650
39
2.0
40
92
2
137
35
2
9
51
1.48
1573--1771
22
9.1
23
75
11
134
34
14
9
41
1.78
1573--1758
43
4.3
42
76
11
130
34
13
10
41
1.78
1700--1777
21
3.8
20
79
14
79
24
16
8
50
1.74
1988--2079
45
2.0
45
91
0
148
32
16
10
40
1.83
3667--3732
32
2.1
32
94
0
114
40
18
21
19
1.91
6535--6560
4
6.5
4
100
0
52
76
0
23
0
0.78
6854--6928
28
2.7
28
78
12
73
36
17
9
37
1.82
9825--9904
22
3.6
22
75
6
81
32
12
17
37
1.87
9824--9909
44
2.0
44
83
4
111
33
11
16
38
1.85
9808--10018
110
1.9
110
82
1
262
40
10
13
35
1.78
10002--10062
26
2.5
24
82
10
72
39
6
18
36
1.76
10181--10441
22
12.0
22
76
9
196
32
11
17
38
1.85
10181--10441
66
4.0
65
76
10
239
32
11
17
38
1.85
12027--12084
28
2.1
28
96
0
107
50
20
13
15
1.78
13079--13194
42
2.7
42
80
10
121
38
3
7
50
1.48
13861--13889
13
2.2
13
100
0
58
13
13
6
65
1.45
14135--14182
21
2.3
20
85
3
60
35
12
4
47
1.60
15163--15247
30
2.8
30
82
10
84
38
5
12
42
1.68
15189--15247
31
1.9
30
86
10
84
37
6
15
40
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15854--15970
22
5.3
22
71
17
64
41
9
15
34
1.79
16185--16259
22
3.4
22
70
14
55
42
10
13
33
1.78
16294--16390
22
4.5
22
78
7
92
40
10
18
30
1.84
16294--16390
44
2.3
43
81
3
115
40
10
18
30
1.84
16464--16643
22
8.3
22
80
3
168
33
11
16
38
1.84
16479--16624
44
3.3
44
85
1
186
34
12
16
36
1.86
23133--23249
60
2.0
59
80
8
130
39
9
20
30
1.84
29799--30114
128
2.6
119
79
9
343
37
19
18
23
1.94

Tables:   1

The End!