Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015494.1 Corchorus olitorius cultivar O-4 contig15527, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44115

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1350--1414
29
2.2
29
88
0
94
47
16
16
18
1.83
4915--5113
31
6.3
31
82
6
222
35
18
18
27
1.95
8379--8442
26
2.6
24
83
11
69
50
1
4
43
1.32
15643--15687
15
2.9
15
80
12
56
48
2
46
2
1.26
16193--16220
11
2.5
11
100
0
56
46
0
0
53
1.00
16510--16569
16
3.8
16
78
6
59
5
38
1
55
1.32
17780--17821
21
2.0
21
86
9
59
16
0
35
47
1.47
18652--18693
21
2.0
21
86
9
59
16
0
35
47
1.47
34459--34489
15
2.1
15
100
0
62
19
6
12
61
1.53
35760--35803
2
21.5
2
90
4
70
47
0
2
50
1.13
37052--37269
111
2.0
112
96
0
402
43
14
10
31
1.80
38338--38538
107
1.9
105
86
2
285
41
6
12
39
1.70
38342--38577
105
2.2
106
80
7
248
43
7
13
35
1.72
42027--42273
122
2.0
124
93
1
426
38
10
1
49
1.47
42258--42297
13
3.0
13
81
3
53
42
2
2
52
1.28
43151--43187
16
2.3
16
90
0
56
37
10
16
35
1.83

Tables:   1

The End!