Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015495.1 Corchorus olitorius cultivar O-4 contig15528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7734
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36


Found at i:4706 original size:12 final size:12

Alignment explanation


    Indices: 4691--4722  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

       4681 TCTTTTTAAC

                        
       4691 TTATTTTCTTCA
          1 TTATTTTCTTCA

                        
       4703 TTATTTTCTTCA
          1 TTATTTTCTTCA

                    
       4715 TTATTTTC
          1 TTATTTTC

       4723 ATTACTATGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69


Consensus pattern (12 bp):   
TTATTTTCTTCA

Found at i:6036 original size:251 final size:251

Alignment explanation


    Indices: 5593--6095  Score: 790
    Period size: 251  Copynumber: 2.0  Consensus size: 251

       5583 TTGCACAAAC

                           **                                 *              
       5593 GACTATAAAACTGAGTGTCAAGTGGGCAAGTTGGGACGATCTGAGCAAAATAAGCTTATTGGTCA
          1 GACTATAAAACTGAGCATCAAGTGGGCAAGTTGGGACGATCTGAGCAAAACAAGCTTATTGGTCA

                             *                    *                *         
       5658 CATAACTAGATAGTGTCGAACGTAAGGGTATTCAACCTGGATGTATACTCCATGTGGAGAGTGTT
         66 CATAACTAGATAGTGTCAAACGTAAGGGTATTCAACCTAGATGTATACTCCATGTAGAGAGTGTT

                *   *    *                                         *         
       5723 GAGTTGTATAATATTCGATTTGGTAATACGCCCCTCTGTCGAACTATATGGTGCTTTGTGAGATG
        131 GAGTCGTAGAATACTCGATTTGGTAATACGCCCCTCTGTCGAACTATATGGTGCTCTGTGAGATG

                   *                                                
       5788 AATGAGAGATAAGCCATGAATGCCGAAAAGGGGAGTGCTTAATTTTTGAGGATTGA
        196 AATGAGAAATAAGCCATGAATGCCGAAAAGGGGAGTGCTTAATTTTTGAGGATTGA

                                *                         *                  
       5844 GACTATAAAACTGAGCATCATGTGGGCAAGTTGGGACGATCTGAGCTAAACAAGCTTATTGGTCA
          1 GACTATAAAACTGAGCATCAAGTGGGCAAGTTGGGACGATCTGAGCAAAACAAGCTTATTGGTCA

                 *                           *             *                 
       5909 CATAAGTAGATAGTGTCAAACGTAAGGGTATTCGACCTAGATGTATAGTCCATGTAGAGAGTGTT
         66 CATAACTAGATAGTGTCAAACGTAAGGGTATTCAACCTAGATGTATACTCCATGTAGAGAGTGTT

                      * *              **    *           *                   
       5974 GAGTCGTAGATTGCTCGATTTGGTAATGTGCCCTTCTGTCGAACTGTATGGTGCTCTGTGAGATG
        131 GAGTCGTAGAATACTCGATTTGGTAATACGCCCCTCTGTCGAACTATATGGTGCTCTGTGAGATG

                       *             *                              
       6039 AATGAGAAATATGCCATGAATGCCGGAAAGGGGAGTGCTTAATTTTTGAGGATTGA
        196 AATGAGAAATAAGCCATGAATGCCGAAAAGGGGAGTGCTTAATTTTTGAGGATTGA

             
       6095 G
          1 G

       6096 TAGAAGAGTG


Statistics
Matches: 228,  Mismatches: 24, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
 251  228  1.00

ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29


Consensus pattern (251 bp):   
GACTATAAAACTGAGCATCAAGTGGGCAAGTTGGGACGATCTGAGCAAAACAAGCTTATTGGTCA
CATAACTAGATAGTGTCAAACGTAAGGGTATTCAACCTAGATGTATACTCCATGTAGAGAGTGTT
GAGTCGTAGAATACTCGATTTGGTAATACGCCCCTCTGTCGAACTATATGGTGCTCTGTGAGATG
AATGAGAAATAAGCCATGAATGCCGAAAAGGGGAGTGCTTAATTTTTGAGGATTGA
Done.