Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015498.1 Corchorus olitorius cultivar O-4 contig15531, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3363
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Found at i:993 original size:21 final size:21

Alignment explanation


    Indices: 942--987  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        932 GTCGTGACTG

                 *     *         
        942 ACCACCTGGGTTCTCAAGCAA
          1 ACCACATGGGTGCTCAAGCAA

                              *  
        963 ACCACATGGGTGCTCAAGGAA
          1 ACCACATGGGTGCTCAAGCAA

                
        984 ACCA
          1 ACCA

        988 TGTGGGCGCC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.33, C:0.30, G:0.22, T:0.15


Consensus pattern (21 bp):   
ACCACATGGGTGCTCAAGCAA

Found at i:1498 original size:24 final size:22

Alignment explanation


    Indices: 1445--1499  Score: 83
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1435 CCCTAAGCAT

                                  
       1445 ACTTACACACAAATAAAATACA
          1 ACTTACACACAAATAAAATACA

                       *   *      
       1467 ACTTACACACACATAGAATACA
          1 ACTTACACACAAATAAAATACA

                 *     
       1489 ACTTAAACACA
          1 ACTTACACACA

       1500 TACGATTTGC


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.55, C:0.25, G:0.02, T:0.18


Consensus pattern (22 bp):   
ACTTACACACAAATAAAATACA
Done.