Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001550.1 Corchorus olitorius cultivar O-4 contig01550, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1195
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.30


Found at i:263 original size:31 final size:31

Alignment explanation


    Indices: 223--402  Score: 204
    Period size: 31  Copynumber: 5.9  Consensus size: 31

        213 TACGGTGTCC

                                          *
        223 GACA-GTGGCATGCCACGTGTACCAAAAAGC
          1 GACACGTGGCATGCCACGTGTACCAAAAAGT

                **     *                   
        253 GACATATGGCACGCCACGTGTACCAAAAAGT
          1 GACACGTGGCATGCCACGTGTACCAAAAAGT

                 * **       *              
        284 GACACATATCATGCCATGTGTACCAAAAAGT
          1 GACACGTGGCATGCCACGTGTACCAAAAAGT

                            *  * **        
        315 GACACGTGGCATGCCATGTATTTCAAAAAGT
          1 GACACGTGGCATGCCACGTGTACCAAAAAGT

                            *    **        
        346 GACACGTGGCATGCCATGTGTTTCAAAAAGT
          1 GACACGTGGCATGCCACGTGTACCAAAAAGT

                                        
        377 GACA-GTGGCATGCCACGTGTA-CAAAA
          1 GACACGTGGCATGCCACGTGTACCAAAA

        403 GAATACGTAC


Statistics
Matches: 132,  Mismatches: 17, Indels: 3
        0.87            0.11        0.02

Matches are distributed among these distances:
  29    5  0.04
  30   19  0.14
  31  108  0.82

ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20


Consensus pattern (31 bp):   
GACACGTGGCATGCCACGTGTACCAAAAAGT

Done.