Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015501.1 Corchorus olitorius cultivar O-4 contig15534, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13982
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Found at i:909 original size:62 final size:62
Alignment explanation
Indices: 810--929 Score: 204
Period size: 62 Copynumber: 1.9 Consensus size: 62
800 CCAAGCTCTA
* *
810 ATACCACTTGTTGGCAGAGAAACCTGGGCCCTTTCTACTCCAGCAAGCCCCACCGAGTTCTG
1 ATACCACTTGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGTTCTG
* *
872 ATACCACTTGTTGGGAGAGGAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGT
1 ATACCACTTGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGT
930 AGCCCATATA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.20
Consensus pattern (62 bp):
ATACCACTTGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGTTCTG
Found at i:946 original size:62 final size:62
Alignment explanation
Indices: 810--947 Score: 170
Period size: 62 Copynumber: 2.2 Consensus size: 62
800 CCAAGCTCTA
* * * * **
810 ATACCACTTGTTGGCAGAGAAACCTGGGCCCTTTCTACTCCAGCAAGCCCCACCGAGTTCTG
1 ATACCACATGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGTGCCC
* * *
872 ATACCACTTGTTGGGAGAGGAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGTAGCCC
1 ATACCACATGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGT-GCCC
*
935 ATA-TACATGTTGG
1 ATACCACATGTTGG
948 ACAACAACCT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
62 62 0.94
63 4 0.06
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.21
Consensus pattern (62 bp):
ATACCACATGTTGGCAGAGAAACCCGGGCCCTGTCTACTCCAGCAAGCCCCACCGAGTGCCC
Found at i:3956 original size:333 final size:335
Alignment explanation
Indices: 3226--4082 Score: 1061
Period size: 333 Copynumber: 2.6 Consensus size: 335
3216 TTACATCAAT
** * *
3226 TAATAAAATCTCAGTAACATTGGATTTAAGAATTTGTTTTTACGAGCATTTGAATCTTGTTTTGA
1 TAATAAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * * *
3291 TTTAATTAGACATTAATTTAG-AAAAAATAAGAATTATGATATTAAAAGCATGAAAAGCCCTTCA
66 TTTAATTAGAAATTAATTTAGAAAAAAATAGGAA-AATGATATTAAAAGCGTGAAAAGCCCTTCA
* * *
3355 ATCGTTTTGGCGTTGAATTATATA-TTTTTATAAGTATTTTAGCCAAAAATTGAGCAAAAATCTT
130 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAATCTT
* * * * *
3419 TCGTGTCAATTTTTGCACAATTTTAGCCGAAATCGTGTACTAAATAACTATCACGGTTTTTGGCT
195 TCGAGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAAAT-ACTATCACAGTTTTTGGCT
* * **
3484 AAAAACGCATTCCGGGGCCCCGGCTGAATTTAGCATAATTTTTGGCGCTGAGACTCCTTGAAATA
259 AAAAACGCATTCCGGGACCCCGACTGAATTTAGCATAATTTTTGGCGCCAAGACTCCTTGAAATA
3549 CCTATATTCATC
324 CCTATATTCATC
* * * * * *
3561 TAATAAAATGTTAGCCGCATTGCATTTAAGGATTT-TGTTTTACAAGCATCTGAATCTTGTTTCG
1 TAATAAAATCTCAGCCACATTGGATTTAAGAATTTGT-TTTTACGAGCATCTGAATCTTGTTTCG
* * * ** *
3625 ATTTAATTAGAAATTAAATCAGAAAAAAATATGGAAAACGATATTAAAAGCGTGAAAAGGACTTT
65 ATTTAATTAGAAATTAATTTAGAAAAAAATA-GGAAAATGATATTAAAAGCGTGAAAAGCCCTTC
* * * *
3690 AATCTTTTTGGTGTTGAATTATATATTTTTTATGACTATTTTAGCTAAAAATTGAGGAAATATCT
129 AATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAATCT
*
3755 TTCGAGTCAATTTTTACAAAATTTTAGTCGAAATCGTGTAAT-AAT-C-ATCACAGTTTTTGGCT
194 TTCGAGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAAATACTATCACAGTTTTTGGCT
* * * * * * *
3817 AACAAA-GCGTTTCGGGACCCCGACTTAGTTTTGCATGATTTTTGGCGCCAAGCCTCCTTGAAAT
259 AA-AAACGCATTCCGGGACCCCGACTGAATTTAGCATAATTTTTGGCGCCAAGACTCCTTGAAAT
3881 ATCC-ATATTCATC
323 A-CCTATATTCATC
* * * *
3894 TAATCAAATCTCAGCCACGTTGGATTTAAAAATTTGTTTTTACGAGTATCTGAATCTTGTTTCGA
1 TAATAAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * * * *
3959 TTTAATTAAAAATTAATTTTGAAAAAAATAAGAAAAATGAAATT-AAAGCGTGAAAAGTCCTTCA
66 TTTAATTAGAAATTAATTTAGAAAAAAAT-AGGAAAATGATATTAAAAGCGTGAAAAGCCCTTCA
* * *
4023 ATCTTTTTGGCGTT-AATT-TATATATTTAATGAGTATTTTATCCAAAAATTGAGGATAAAA
130 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGA-AAAA
4083 ACGCATTCCG
Statistics
Matches: 442, Mismatches: 71, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
330 32 0.07
331 7 0.02
332 30 0.07
333 162 0.37
334 9 0.02
335 71 0.16
336 57 0.13
337 74 0.17
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (335 bp):
TAATAAAATCTCAGCCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
TTTAATTAGAAATTAATTTAGAAAAAAATAGGAAAATGATATTAAAAGCGTGAAAAGCCCTTCAA
TCTTTTTGGCGTTGAATTATATATTTTTTATGAGTATTTTAGCCAAAAATTGAGGAAAAATCTTT
CGAGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTAATAAATACTATCACAGTTTTTGGCTAA
AAACGCATTCCGGGACCCCGACTGAATTTAGCATAATTTTTGGCGCCAAGACTCCTTGAAATACC
TATATTCATC
Found at i:5206 original size:335 final size:329
Alignment explanation
Indices: 4220--6468 Score: 2066
Period size: 335 Copynumber: 6.8 Consensus size: 329
4210 TTCCCAGCCA
* * * * * * *
4220 TTGTTTTTACAAGCATTTGAATCATGTTTCAATTTAATTAGAAATTAATTCAAAAAAAAAAAGAA
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTC-AAAAAAATAGGAA
*
4285 AAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTTATGA
65 AAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGA
* * * * *
4350 GTATTCTGGCTAAAAATTGAGGAAAATATTTT-GGGTCAGTTTTTGAAAAATATTAGCCAAAATC
130 GTATTTTGGCTAAAAATTGAGGAAAA-ATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * * * *
4414 GTGTACCAACA-CAATCTTTTTTTTTTTTGCTAAAAACGCGTTCCGGGGCCCCCGGTCAGTTTTG
194 GTGTACTAACATC-A-C---ATTTTTTTGGCTAAAAATGCGTTCCAGGG-CCCCGGTCAGTTTTG
* * **
4478 CATGATTTTTGGCGCCAAGACTCCTTGAAATTTCTATATTTATCTAATAAAATCTCAGCCACATT
253 CATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT
4543 GGATTTAAGGAT
318 GGATTTAAGGAT
* * * * *
4555 TTGTTTTTACGAGCATATAAATGTTGTTTCGATTTAATTACAAATTAATTCGGAAAAAGTA--AA
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTC-AAAAAAATAGGAA
* * *
4618 AAA--ATATTAGAAGCGTAAAAAACCCTTCAATATTTTTGGCATTGAATTATATATTTTTTATGC
65 AAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATG-
* * * * **
4681 A-TATTTTAGCCAAAAATTGAGGAAATATCTTTTGGGTCAATTTTTGCAAAATTTTAGTTGAAAT
129 AGTATTTTGGCTAAAAATTGAGGAAAAAT-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT
* * * *
4745 CGTGTAATAATCATCACA-ATTTTTGGCTAAAAATGCGTTCCAGAGCCCCAAGTCAGTTTTGCAT
193 CGTGTACTAA-CATCACATTTTTTTGGCTAAAAATGCGTTCCAGGGCCCC-GGTCAGTTTTGCAT
* * ** * * * * * *
4809 TATTTTTTGCATCAAGACTCCTTGAGATATTTATATTCATCTAATCAAATCTAAGACACATTGCA
256 GATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGA
*
4874 TTTAAAGAT
321 TTTAAGGAT
* * * * * *
4883 TTGTTTTTACAAACATCCAAATCTTGTTTCGA-TTAATTAGACATTAATCCAAAAAAATATGAAA
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATA-GGAA
* * * * * * * *
4947 AAACAATATGAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCATTAAATTATATATATTTAATGA
65 AAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGA
** * * * * *
5012 GTATTTTTACCAAAAATTAAGGAAAAACTTTTCAGGTCATTTTTTGTAAAATTTTAGCCGAAATC
130 GTATTTTGGCTAAAAATTGAGGAAAAA-TTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
** * *
5077 GTGTACTAATCATCACAGTTTTTTTTTCCCTAAAAATGCGTTTC-GGGCCCCCGACTCAGTTTTG
194 GTGTACTAA-CATCACA---TTTTTTTGGCTAAAAATGCGTTCCAGGG-CCCCG-GTCAGTTTTG
*** *
5141 CATGATTTTTGGCGTTGAGACTCCTTGAAATATCTATATTCATCTAATCAAATCTCAGCCACATT
253 CATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT
*
5206 GCATTTAAGGAT
318 GGATTTAAGGAT
* *** *
5218 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTATAAATTAATTTTGAAAAATATGAAA
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAGGAAA
* * * * * * *
5283 AACGATATTAAAAGCGTGAAAA-CTCCTCCAATATTTTT-TCAGTTAAATTATATATATTTTGTG
66 AACGATATTAGAAGCGTGAAAAGC-CCTTCAATCTTTTTGGCA-TTGAATTATATATTTTTTATG
* *
5346 AGTATTGTGGCTAAAAATTGAGG-AAAA---TCGGGTCAATTTTTGTAAAATTTTAGCCGAAATC
129 AGTATTTTGGCTAAAAATTGAGGAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
* * *
5407 GTGTAC---CATCACTTTTTTTTTGGCT-AAAATCCGTTCCGGGGCCCCGGGTCAGTTTTGCATG
194 GTGTACTAACATCAC-ATTTTTTTGGCTAAAAATGCGTTCCAGGGCCCC-GGTCAGTTTTGCATG
* * * ** * *
5468 ACTTTTGGTTG-CAAAACTCCTTGAAAGCTCTATATTCATCTAACCAAGTCTTAGCCACATTGGA
257 ATTTTTGG-CGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGA
*
5532 TTTAAGGTT
321 TTTAAGGAT
* * * * ** *
5541 TTTTTTTTACGAGCATTTGAATCATGTTTTAATTTAATTAGAAATTAATTTGAAAAAAAAGTAGG
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAA-TT-CAAAAAAA-TAGG
* * * *
5606 AAAAATGATATTGGAAGCGTGAGAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTGT
63 AAAAACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTAT
* * **
5671 GAGTATTGTGGCTAAAAATT-A-GAAAAATAATTCGGAAC-ATTTTTGCAAAATTTTA---G---
128 GAGTATTTTGGCTAAAAATTGAGGAAAAAT-TTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAA
* *
5727 -C-TG-----A-A-CAC-TTTTTTTGGCTAAAAACGCGTTCCAAGGCCCCGGGTCAGTTTTGCAT
192 TCGTGTACTAACATCACATTTTTTTGGCTAAAAATGCGTTCCAGGGCCCC-GGTCAGTTTTGCAT
* * ** * *
5782 GATTTTTGGCACCAAAACTCCATAAAATATATCTATATTCATCTAACCAAATCTCGGTCACATTG
256 GATTTTTGGCGCCAAGACTCC-TTGAA-ATATCTATATTCATCTAACCAAATCTCAGCCACATTG
* *
5847 TATTTAAAGAT
319 GATTTAAGGAT
* * * * * *
5858 TTATTTTTACGAGTATCT-AATGTTATTTCGATTTAATTAGCAATTAATTTGGAAATAAAATAGG
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAA-TT-CAAA-AAAATAGG
* *
5922 AAAAACGATATTAGAAGCGTGAAAAAGACTTTCAAAAT-TTTTTGGCATTGAATTATATATTTTT
63 AAAAACGATATTAGAAGCGTG-AAAAGCCCTTC--AATCTTTTTGGCATTGAATTATATATTTTT
* * * * *
5986 TATGAGTATTTTCGCTAGAATTTGAGGAAAAATCTTTCGGCT-TATTTTTGCAAAATTTTAGCCG
125 TATGAGTATTTTGGCTAAAAATTGAGGAAAAAT-TTTCGGGTCAATTTTTGCAAAATTTTAGCCG
* ** * * * *
6050 AAATCGTATACTAATCATCACA-GATTTTGGCTAAAAA--CTGTTTCGGGGCCCTGCTCAGTTTT
189 AAATCGTGTACTAA-CATCACATTTTTTTGGCTAAAAATGC-GTTCCAGGGCCCCGGTCAGTTTT
* * * *
6112 GCATGATTTTTGGTGCCAAGACTCCTTCAAATATATATATTCATATAACCAAATCT-AGCCACAT
252 GCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAT
6176 TGGATTTAAGGAT
317 TGGATTTAAGGAT
* * * **
6189 TTGTTTTTACAAGCATCTGAATCTTATTTCGATTTAATTAGAAATTAATTC-GGAAAATAGGAAA
1 TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAGGAAA
* * * * * * *
6253 AACAATATTAGAAGCATTAAAATCCCTTCAATCTTTTT--TATGTCAAATTATATA-TCTTTATG
66 AACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCAT-T-GAATTATATATTTTTTATG
* *
6315 AGTATTTTAGCTAAAAATTGAGGAAATATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAA
129 AGTATTTTGGCTAAAAATTGAGGAAAAAT-TTTCGGGTCAATTTTTGCAAAATTTTAGCCG-AAA
* * * * ** * **
6380 TCGTGTACTAACCATCACGA--TTTTCGGCTAAAAACGCGTTACAGGGTCATGACTTTGTTTTGC
192 TCGTGTACTAA-CATCAC-ATTTTTTTGGCTAAAAATGCGTTCCAGGGCCCCG-GTCAGTTTTGC
**
6443 ATGATTTTTGGTACCAAGACTCCTTG
254 ATGATTTTTGGCGCCAAGACTCCTTG
6469 CAAAATTTAA
Statistics
Matches: 1581, Mismatches: 257, Indels: 158
0.79 0.13 0.08
Matches are distributed among these distances:
314 11 0.01
315 48 0.03
316 59 0.04
317 67 0.04
318 44 0.03
319 4 0.00
320 31 0.02
321 1 0.00
323 128 0.08
324 19 0.01
325 55 0.03
326 122 0.08
327 62 0.04
328 177 0.11
329 44 0.03
330 41 0.03
331 230 0.15
332 87 0.06
333 12 0.01
334 41 0.03
335 261 0.17
336 37 0.02
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (329 bp):
TTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAGGAAA
AACGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGCATTGAATTATATATTTTTTATGAG
TATTTTGGCTAAAAATTGAGGAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
GTACTAACATCACATTTTTTTGGCTAAAAATGCGTTCCAGGGCCCCGGTCAGTTTTGCATGATTT
TTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAA
GGAT
Found at i:6702 original size:23 final size:23
Alignment explanation
Indices: 6672--6717 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
6662 CATGAGTTTT
6672 GGCTAAAAACGCGTTCCGGGGTC
1 GGCTAAAAACGCGTTCCGGGGTC
6695 GGCTAAAAACGCGTTCCGGGGTC
1 GGCTAAAAACGCGTTCCGGGGTC
6718 CCAGCTCAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.35, T:0.17
Consensus pattern (23 bp):
GGCTAAAAACGCGTTCCGGGGTC
Found at i:7315 original size:39 final size:40
Alignment explanation
Indices: 7259--7339 Score: 137
Period size: 39 Copynumber: 2.0 Consensus size: 40
7249 TTTAATTCCT
7259 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
1 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
* *
7299 ATGTAATA-CTATAATAACTGAAATACTTACATTAATTAA
1 ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
7338 AT
1 AT
7340 TCTTATGTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.37
Consensus pattern (40 bp):
ATGTAATATATATAATAACTAAAATACTTACATTAATTAA
Found at i:7367 original size:26 final size:25
Alignment explanation
Indices: 7330--7379 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
7320 AATACTTACA
*
7330 TTAATTAAATTCTTATGTATTTGTT
1 TTAATTAAATTCTTAGGTATTTGTT
7355 TTAATTCAAATTCTTAGGTATTTGT
1 TTAATT-AAATTCTTAGGTATTTGT
7380 GTAAACGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.28, C:0.06, G:0.10, T:0.56
Consensus pattern (25 bp):
TTAATTAAATTCTTAGGTATTTGTT
Found at i:11174 original size:2 final size:2
Alignment explanation
Indices: 11167--11192 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11157 TTCATAACCT
11167 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
11193 AGTTACTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11552 original size:19 final size:19
Alignment explanation
Indices: 11511--11549 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
11501 CCTTATACTA
* *
11511 TAAAAATTTTTATAACCTT
1 TAAAAATTTTAACAACCTT
11530 TAAAACATTTTAACAACCTT
1 TAAAA-ATTTTAACAACCTT
11550 AAAGAAGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAAAATTTTAACAACCTT
Found at i:13587 original size:4 final size:4
Alignment explanation
Indices: 13578--13612 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
13568 GATTAGATAA
13578 TATC TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TAT
13613 ATATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Done.