Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015518.1 Corchorus olitorius cultivar O-4 contig15551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17455

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1289--1518
100
2.3
100
85
2
291
34
12
9
43
1.74
4182--4231
12
3.8
12
76
19
55
26
0
12
62
1.30
4179--4244
28
2.4
28
97
0
123
33
0
10
56
1.34
5144--5192
20
2.3
22
82
10
57
48
6
14
30
1.67
5120--5202
22
3.8
22
78
12
89
46
8
18
26
1.77
8553--8594
19
2.3
18
84
8
57
35
2
0
61
1.09
10421--10453
17
2.0
17
88
5
50
33
15
18
33
1.92
11651--11692
20
2.1
20
100
0
84
14
26
9
50
1.73
14458--14499
14
2.8
15
76
23
52
38
33
4
23
1.76

Tables:   1

The End!