Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015519.1 Corchorus olitorius cultivar O-4 contig15552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91168

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2071--2114
14
2.9
16
75
25
58
40
31
4
22
1.74
2204--2500
147
2.0
147
98
0
567
20
8
25
45
1.79
4011--4039
6
4.8
6
100
0
58
17
17
17
48
1.82
4811--4868
29
2.0
29
87
9
84
41
13
15
29
1.86
4900--4926
9
3.0
9
100
0
54
55
11
0
33
1.35
7152--7177
8
3.2
8
100
0
52
26
23
0
50
1.50
8497--8576
15
5.6
15
69
19
55
37
2
3
56
1.31
10216--10405
44
4.3
44
83
2
193
36
10
14
38
1.80
10216--10410
22
8.9
22
73
6
162
35
10
15
38
1.81
13893--14044
22
6.9
22
75
10
114
36
9
15
38
1.81
13894--14023
44
2.9
45
80
8
131
37
9
16
36
1.80
13890--14113
67
3.3
68
82
7
262
34
8
18
37
1.82
14161--14276
22
5.3
22
77
8
101
34
8
16
40
1.79
14356--14588
22
10.6
22
76
9
181
42
10
15
32
1.80
14356--14588
88
2.6
87
79
10
251
42
10
15
32
1.80
14667--15046
22
17.5
22
70
11
185
38
10
15
35
1.83
14812--14893
23
3.8
22
76
12
73
32
9
17
40
1.82
14680--15051
131
2.8
131
72
13
309
37
10
16
35
1.83
15032--15070
19
2.1
19
85
0
51
53
2
12
30
1.52
17431--17488
29
2.0
29
100
0
116
48
10
6
34
1.64
20848--20914
33
2.0
33
100
0
134
17
11
23
46
1.82
23988--24062
31
2.5
31
80
6
82
20
21
20
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24002--24064
31
2.0
31
90
0
99
22
20
22
34
1.96
24042--24130
31
2.9
32
85
6
112
16
15
26
40
1.89
26544--26599
29
1.9
29
85
7
78
21
19
14
44
1.86
36573--36645
3
25.0
3
94
5
132
34
0
0
65
0.93
47230--47299
35
2.0
35
100
0
140
25
20
22
31
1.98
48796--48848
27
2.0
26
85
7
70
69
15
1
13
1.27
49857--50003
80
1.9
75
87
6
213
41
10
18
29
1.84
53431--53521
33
2.7
34
94
5
168
30
14
5
49
1.66
55466--55502
2
18.5
2
94
0
65
51
0
0
48
1.00
66526--66563
19
1.9
19
89
5
58
78
0
21
0
0.74
66528--66563
6
5.7
6
96
3
54
80
0
19
0
0.71
67368--67425
19
2.9
20
79
5
64
36
13
17
32
1.89
67372--67426
21
2.8
20
77
5
58
36
12
16
34
1.87
67476--67514
19
2.1
19
95
0
69
41
10
28
20
1.85
67803--67868
30
2.1
33
91
8
111
51
0
21
27
1.48
68880--69090
112
2.0
107
87
10
308
42
10
11
36
1.75
70138--70190
20
2.5
20
82
14
63
16
1
3
77
1.01
70146--70184
11
3.5
11
89
3
60
15
2
2
79
0.95
70138--70184
22
2.1
22
88
7
69
14
2
4
78
0.99
78636--78666
16
1.9
16
100
0
62
64
6
16
12
1.47
83758--83807
15
3.4
14
84
13
64
26
20
30
24
1.98
85256--85296
21
1.9
22
85
5
57
9
17
29
43
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85984--86081
49
2.0
49
91
0
160
31
12
18
37
1.88
86698--86732
18
1.9
18
94
0
61
48
34
0
17
1.47
87439--87472
17
1.9
18
88
5
52
44
5
0
50
1.26
90888--90962
28
2.7
28
76
10
82
26
22
12
38
1.89

Tables:   1

The End!