Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001552.1 Corchorus olitorius cultivar O-4 contig01552, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1385
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.35


Found at i:172 original size:22 final size:20

Alignment explanation


    Indices: 141--191  Score: 57
    Period size: 21  Copynumber: 2.5  Consensus size: 20

        131 TAAGGTACTG

                 *               
        141 AAAAAGTAATAAAGGATATAA
          1 AAAAAATAAT-AAGGATATAA

                         * *     
        162 AAAAACATAATAATGCTATAA
          1 AAAAA-ATAATAAGGATATAA

                     
        183 AAAAAATAA
          1 AAAAAATAA

        192 GTAACCTTCA


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  20    4  0.15
  21   18  0.69
  22    4  0.15

ACGTcount: A:0.69, C:0.04, G:0.08, T:0.20


Consensus pattern (20 bp):   
AAAAAATAATAAGGATATAA
Done.