Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015521.1 Corchorus olitorius cultivar O-4 contig15554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 638

Length: 1064
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39


Found at i:638 original size:15 final size:15

Alignment explanation


    Indices: 618--649  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        608 AAGTTACTAA

                           
        618 AATTACCCAAGATGT
          1 AATTACCCAAGATGT

                           
        633 AATTACCCAAGATGT
          1 AATTACCCAAGATGT

              
        648 AA
          1 AA

        650 GGTTACTAAG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25


Consensus pattern (15 bp):   
AATTACCCAAGATGT
Done.