Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015522.1 Corchorus olitorius cultivar O-4 contig15555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7557

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4215--4331
22
5.4
22
71
6
85
39
17
11
31
1.86
4470--4497
13
2.2
13
100
0
56
46
0
0
53
1.00
4754--4795
21
2.0
21
90
0
66
45
7
11
35
1.69
4885--5073
22
8.7
22
70
14
99
37
12
14
35
1.84
4885--4985
43
2.3
44
84
5
125
42
12
10
33
1.78
4905--5073
65
2.6
66
83
1
207
35
11
16
36
1.86
4909--5022
43
2.6
44
81
2
131
37
14
15
32
1.88
5128--5236
22
4.8
22
74
12
96
40
7
11
40
1.70
5130--5250
22
5.3
23
77
9
92
41
8
12
38
1.73
5347--5401
28
1.9
29
85
10
78
45
9
5
40
1.59
5252--5714
22
20.9
22
67
14
138
38
9
14
37
1.80
5655--5732
22
3.5
22
82
3
77
38
11
10
39
1.76
5823--6213
22
18.0
22
68
11
121
39
9
15
36
1.79
5953--6032
23
3.5
22
80
8
72
41
5
13
40
1.67
6150--6311
22
7.4
22
67
10
64
40
6
14
38
1.73

Tables:   1

The End!