Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015524.1 Corchorus olitorius cultivar O-4 contig15557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15426

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--227
2
40.0
2
100
0
160
50
50
0
0
1.00
227--258
2
16.0
2
100
0
64
50
0
0
50
1.00
573--652
42
1.9
42
92
0
133
30
7
16
46
1.74
4539--4590
22
2.4
22
90
0
77
36
15
30
17
1.91
13289--13325
19
1.9
19
100
0
74
45
0
10
43
1.39
14784--14983
22
8.8
22
70
16
97
37
19
12
31
1.88
14783--15092
44
6.8
44
72
11
196
37
17
12
32
1.87
14856--14908
27
2.0
27
88
0
79
39
15
15
30
1.87
14883--15092
22
9.4
22
75
7
109
37
18
11
32
1.87
14883--15030
66
2.2
67
81
7
165
35
19
12
32
1.89
15234--15290
22
2.6
23
72
13
57
38
14
7
40
1.73
15319--15425
22
4.9
22
75
8
101
35
14
12
37
1.84
15264--15422
68
2.4
66
82
8
171
34
13
11
39
1.82
15276--15425
44
3.4
44
76
1
129
34
14
12
39
1.82

Tables:   1

The End!