Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015525.1 Corchorus olitorius cultivar O-4 contig15558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35855

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
606--751
22
6.6
22
84
3
132
39
18
12
30
1.87
606--751
66
2.2
66
82
1
166
39
18
12
30
1.87
605--751
44
3.3
43
81
3
159
38
18
12
29
1.88
871--937
22
3.0
22
69
16
57
29
20
5
43
1.76
978--1216
22
10.8
22
68
14
127
33
15
10
41
1.81
1040--1198
68
2.4
66
82
8
171
34
13
11
39
1.82
3120--3177
23
2.6
22
82
12
66
43
20
10
25
1.84
3248--3340
48
1.9
48
84
4
125
29
23
10
36
1.89
2943--3423
22
21.4
22
71
11
206
35
18
11
35
1.87
4191--4242
6
8.7
6
86
14
72
1
0
13
84
0.70
4191--4242
19
2.9
18
88
11
72
1
0
13
84
0.70
5982--6029
22
2.2
23
79
20
59
66
0
0
33
0.92
6134--6175
21
2.0
21
90
0
66
30
16
4
47
1.67
16718--16759
8
5.5
8
94
5
70
78
11
9
0
0.96
16961--17059
25
4.0
25
95
0
171
12
29
20
38
1.88
17056--17097
21
2.0
21
86
9
59
47
35
0
16
1.47
17903--17951
25
2.0
25
95
0
89
12
30
20
36
1.89
17948--17989
21
2.0
21
86
9
59
47
33
0
19
1.49
18501--18677
31
5.6
31
78
4
140
29
24
24
20
1.99
20513--20595
31
2.6
32
78
3
87
33
31
21
13
1.92
23883--23941
29
2.0
29
83
0
73
37
3
13
45
1.60
31926--31954
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32332--32362
14
2.2
14
100
0
62
41
6
12
38
1.69
33678--33711
18
1.9
18
88
5
52
55
0
5
38
1.24
35082--35129
2
24.0
2
83
8
62
45
6
0
47
1.27
35410--35490
30
2.9
27
84
10
117
41
2
3
51
1.32

Tables:   1

The End!