Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015531.1 Corchorus olitorius cultivar O-4 contig15564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20972

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1548--1590
15
2.9
15
83
10
52
53
0
2
44
1.13
1550--1591
9
4.7
9
77
11
50
54
0
2
42
1.13
1554--1604
24
2.1
24
85
0
66
49
0
5
45
1.26
10497--10633
72
1.9
72
92
3
231
24
26
13
36
1.92
11700--11765
30
2.2
30
88
0
96
30
21
15
33
1.94
11712--11779
30
2.3
30
92
5
111
26
19
17
36
1.94
12313--12600
71
4.0
71
89
7
452
30
22
12
34
1.91
12447--12608
79
2.1
79
98
0
315
30
25
11
33
1.90
12376--12679
150
2.0
150
86
5
418
28
27
11
31
1.92
12566--12702
71
1.9
70
97
1
256
25
38
13
22
1.90
12659--12993
58
5.8
58
95
3
554
22
40
9
26
1.85
12857--12963
29
3.7
29
67
9
92
24
39
10
26
1.87
12900--12993
30
3.2
30
75
6
111
25
43
9
21
1.82
13051--13090
21
1.9
21
100
0
80
22
32
25
20
1.98
13007--13133
65
2.0
65
96
0
236
26
33
15
24
1.95
13103--13173
34
2.1
34
100
0
142
28
38
14
19
1.91
16883--16927
15
3.0
15
78
12
56
37
13
22
26
1.91
18240--18265
12
2.2
12
100
0
52
50
0
7
42
1.31
20497--20647
22
6.8
22
69
13
69
40
12
6
40
1.69
20541--20654
22
5.2
23
73
11
80
39
14
6
40
1.70

Tables:   1

The End!