Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015532.1 Corchorus olitorius cultivar O-4 contig15565, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3336
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:2947 original size:42 final size:43

Alignment explanation


    Indices: 2896--2989  Score: 138
    Period size: 45  Copynumber: 2.2  Consensus size: 43

       2886 AGTGCATTGC

                                    *     *            
       2896 CTAA-ATTCTA-CTCCATCTCTAGGTAATTTATCAAAATAAAG
          1 CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG

                                                         
       2937 CTAATATTCTACTCCTCCATCTCTAGATAATTCATCAAAATAAAG
          1 CTAATATTCTA--CCTCCATCTCTAGATAATTCATCAAAATAAAG

                    
       2982 CTAATATT
          1 CTAATATT

       2990 AATTGTTATT


Statistics
Matches: 47,  Mismatches: 2, Indels: 4
        0.89            0.04        0.08

Matches are distributed among these distances:
  41    4  0.09
  42    6  0.13
  45   37  0.79

ACGTcount: A:0.38, C:0.21, G:0.05, T:0.35


Consensus pattern (43 bp):   
CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG
Done.